FTIR Spectroscopy for Identification and Intra-Species Characterization of Serpula lacrymans

被引:13
作者
Barboux, Rony [1 ,2 ]
Bousta, Faisl [2 ]
Di Martino, Patrick [1 ]
机构
[1] CY Cergy Paris Univ, Lab ERRMECe, F-95000 Neuville Sur Oise, France
[2] Sorbonne Univ, Lab Rech Monuments Hist, Ctr Rech Conservat CRC,CNRS,USR 3224, Museum Natl Hist Nat,Minist Culture & Commun, 29 Rue Paris, F-77420 Champs Sur Marne, France
来源
APPLIED SCIENCES-BASEL | 2021年 / 11卷 / 18期
关键词
Serpula lacrymans; biodegradation; wood; cultural heritage; FTIR; identification; FILAMENTOUS FUNGI; RAPID IDENTIFICATION; DRY ROT; PRIMERS; DIFFERENTIATION; PHYSIOLOGY; DIVERSITY; TOOL;
D O I
10.3390/app11188463
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Featured Application The method described in this study consists of the preparation and analysis of mycelium samples for the identification of Serpula lacrymans by FTIR. The dry rot fungus Serpula lacrymans is the most destructive fungal agent of wood building materials in Europe, Russia, North America, and Japan. The identification of this wood-deteriorating agent and the discrimination of different fungal isolates is very important for the control of buildings in general and for the preservation of cultural heritage in particular. The objective of the study was to develop a Fourier transform infrared (FTIR) method coupled with a partial least square discriminant analysis (PLS-DA) for the sample preparation and identification of S. lacrymans. Five distinct S. lacrymans strains were analysed and compared to two strains of unrelated fungal species. Different methods of mycelial growth, sample preparation, and FTIR spectral data normalisation were compared. FTIR analysis of a harvested mycelium grown on the surface of a polyether sulfone microfiltration membrane deposited on a malt extract agar medium, followed by vector normalization and PLS-DA statistical analysis, resulted in 100% correct attribution at phylum, species, and strain level, regardless of the type of standardization used. This study confirms the applicability of FTIR spectroscopy for the identification of S. lacrymans and the discrimination of different strains belonging to this species.
引用
收藏
页数:10
相关论文
共 38 条
[1]  
[Anonymous], LOI N 2014 366 24 MA
[2]   Identification of dermatophytes by Fourier transform infrared spectroscopy (FT-IR) [J].
Bastert, J ;
Korting, HC ;
Traenkle, P ;
Schmalreck, AF .
MYCOSES, 1999, 42 (9-10) :525-528
[3]   ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases [J].
Bellemain, Eva ;
Carlsen, Tor ;
Brochmann, Christian ;
Coissac, Eric ;
Taberlet, Pierre ;
Kauserud, Havard .
BMC MICROBIOLOGY, 2010, 10
[4]   Characterization of the cell wall of the ubiquitous plant pathogen Botrytis cinerea [J].
Cantu, Dario ;
Greve, L. Carl ;
Labavitch, John M. ;
Powell, Ann L. T. .
MYCOLOGICAL RESEARCH, 2009, 113 :1396-1403
[5]   Classification and identification of Rhodobryum roseum Limpr. and its adulterants based on fourier-transform infrared spectroscopy (FTIR) and chemometrics [J].
Cao, Zhen ;
Wang, Zhenjie ;
Shang, Zhonglin ;
Zhao, Jiancheng .
PLOS ONE, 2017, 12 (02)
[6]   PHYSIOLOGY AND BIOCHEMISTRY OF FUNGAL SPORULATION [J].
DAHLBERG, KR ;
VANETTEN, JL .
ANNUAL REVIEW OF PHYTOPATHOLOGY, 1982, 20 :281-301
[7]   Epidemiological investigation and typing of Candida glabrata clinical isolates by FTIR spectroscopy [J].
Essendoubi, Mohammed ;
Toubas, Dominique ;
Lepouse, Claire ;
Leon, Alain ;
Bourgeade, Fablenne ;
Pinon, Jean-Michel ;
Manfait, Michel ;
Sockalingum, Ganesh D. .
JOURNAL OF MICROBIOLOGICAL METHODS, 2007, 71 (03) :325-331
[8]   FT-IR spectroscopy as a tool for rapid identification and intra-species characterization of airborne filamentous fungi [J].
Fischer, G ;
Braun, S ;
Thissen, R ;
Dott, W .
JOURNAL OF MICROBIOLOGICAL METHODS, 2006, 64 (01) :63-77
[9]   Occurrence of indoor wood decay basidiomycetes in Europe [J].
Gabriel, Jiri ;
Svec, Karel .
FUNGAL BIOLOGY REVIEWS, 2017, 31 (04) :212-217
[10]   ITS PRIMERS WITH ENHANCED SPECIFICITY FOR BASIDIOMYCETES - APPLICATION TO THE IDENTIFICATION OF MYCORRHIZAE AND RUSTS [J].
GARDES, M ;
BRUNS, TD .
MOLECULAR ECOLOGY, 1993, 2 (02) :113-118