Genome-wide association analysis identifies a meningioma risk locus at 11p15.5

被引:20
作者
Claus, Elizabeth B. [1 ,2 ]
Cornish, Alex J. [3 ]
Broderick, Peter [3 ]
Schildkraut, Joellen M. [4 ]
Dobbins, Sara E. [3 ]
Holroyd, Amy [3 ]
Calvocoressi, Lisa [1 ]
Lu, Lingeng [1 ]
Hansen, Helen M. [5 ]
Smirnov, Ivan [5 ]
Walsh, Kyle M. [5 ]
Schramm, Johannes [6 ]
Hoffmann, Per [7 ,8 ]
Nothen, Markus M. [8 ,9 ,10 ]
Jockel, Karl-Heinz [11 ]
Swerdlow, Anthony [3 ,12 ]
Larsen, Signe Benzon [13 ]
Johansen, Christoffer [13 ]
Simon, Matthias [6 ,14 ]
Bondy, Melissa [15 ,16 ]
Wrensch, Margaret [5 ,17 ]
Houlston, Richard S. [3 ]
Wiemels, Joseph L. [5 ,17 ,18 ]
机构
[1] Yale Univ, Sch Publ Hlth, New Haven, CT USA
[2] Brigham & Womens Hosp, Dept Neurosurg, 75 Francis St, Boston, MA 02115 USA
[3] Inst Canc Res, Div Genet & Epidemiol, 15 Cotswold Rd, London SM2 5NG, England
[4] Univ Virginia, Dept Publ Hlth Sci, Charlottesville, VA USA
[5] Univ Calif San Francisco, Dept Neurol Surg, Div Neuroepidemiol, San Francisco, CA 94143 USA
[6] Univ Bonn, Med Sch, Bonn, Germany
[7] Univ Basel, Dept Biomed, Human Genom Res Grp, Basel, Switzerland
[8] Univ Bonn, Dept Genom, Life & Brain Ctr, Bonn, Germany
[9] Univ Bonn, Sch Med, Inst Human Genet, Bonn, Germany
[10] Univ Hosp Bonn, Bonn, Germany
[11] Univ Duisburg Essen, Univ Hosp Essen, Inst Med Informat Biometry & Epidemiol, Essen, Germany
[12] Inst Canc Res, Div Breast Canc Res, London, England
[13] Danish Canc Soc Res Ctr, Unit Survivorship, Copenhagen, Denmark
[14] Bethel Clin, Dept Neurosurg, Bielefeld, Germany
[15] Baylor Coll Med, Dept Med, Sect Epidemiol & Populat Sci, Houston, TX 77030 USA
[16] Baylor Coll Med, Dan L Duncan Comprehens Canc Ctr, Houston, TX 77030 USA
[17] Univ Calif San Francisco, Inst Human Genet, San Francisco, CA 94143 USA
[18] Univ Calif San Francisco, Dept Epidemiol & Biostat, San Francisco, CA 94143 USA
关键词
genome-wide association study; meningioma; polygenic; risk; single-nucleotide polymorphism; GENETIC EPIDEMIOLOGY RESEARCH; NERVOUS-SYSTEM TUMORS; END RESULTS PROGRAM; QUALITY-CONTROL; ADULT HEALTH; COMMON SNPS; CANCER; BRAIN; HERITABILITY; SURVEILLANCE;
D O I
10.1093/neuonc/noy077
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background. Meningiomas are adult brain tumors originating in the meningeal coverings of the brain and spinal cord, with significant heritable basis. Genome-wide association studies (GWAS) have previously identified only a single risk locus for meningioma, at 10p12.31. Methods. To identify a susceptibility locus for meningioma, we conducted a meta-analysis of 2 GWAS, imputed using a merged reference panel from the 1000 Genomes Project and UK10K data, with validation in 2 independent sample series totaling 2138 cases and 12 081 controls. Results. We identified a new susceptibility locus for meningioma at 11p15.5 (rs2686876, odds ratio = 1.44, P = 9.86 x 10-9). A number of genes localize to the region of linkage disequilibrium encompassing rs2686876, including RIC8A, which plays a central role in the development of neural crest-derived structures, such as the meninges. Conclusions. This finding advances our understanding of the genetic basis of meningioma development and provides additional support for a polygenic model of meningioma.
引用
收藏
页码:1485 / 1493
页数:9
相关论文
共 51 条
[1]   A global reference for human genetic variation [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Wang, Jun ;
Wilson, Richard K. ;
Boerwinkle, Eric ;
Doddapaneni, Harsha ;
Han, Yi ;
Korchina, Viktoriya ;
Kovar, Christie ;
Lee, Sandra ;
Muzny, Donna ;
Reid, Jeffrey G. ;
Zhu, Yiming ;
Chang, Yuqi ;
Feng, Qiang ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Lan, Tianming ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Liu, Shengmao ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Tang, Meifang ;
Wang, Bo .
NATURE, 2015, 526 (7571) :68-+
[2]   Data quality control in genetic case-control association studies [J].
Anderson, Carl A. ;
Pettersson, Fredrik H. ;
Clarke, Geraldine M. ;
Cardon, Lon R. ;
Morris, Andrew P. ;
Zondervan, Krina T. .
NATURE PROTOCOLS, 2010, 5 (09) :1564-1573
[3]   The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans [J].
Ardlie, Kristin G. ;
DeLuca, David S. ;
Segre, Ayellet V. ;
Sullivan, Timothy J. ;
Young, Taylor R. ;
Gelfand, Ellen T. ;
Trowbridge, Casandra A. ;
Maller, Julian B. ;
Tukiainen, Taru ;
Lek, Monkol ;
Ward, Lucas D. ;
Kheradpour, Pouya ;
Iriarte, Benjamin ;
Meng, Yan ;
Palmer, Cameron D. ;
Esko, Tonu ;
Winckler, Wendy ;
Hirschhorn, Joel N. ;
Kellis, Manolis ;
MacArthur, Daniel G. ;
Getz, Gad ;
Shabalin, Andrey A. ;
Li, Gen ;
Zhou, Yi-Hui ;
Nobel, Andrew B. ;
Rusyn, Ivan ;
Wright, Fred A. ;
Lappalainen, Tuuli ;
Ferreira, Pedro G. ;
Ongen, Halit ;
Rivas, Manuel A. ;
Battle, Alexis ;
Mostafavi, Sara ;
Monlong, Jean ;
Sammeth, Michael ;
Mele, Marta ;
Reverter, Ferran ;
Goldmann, Jakob M. ;
Koller, Daphne ;
Guigo, Roderic ;
McCarthy, Mark I. ;
Dermitzakis, Emmanouil T. ;
Gamazon, Eric R. ;
Im, Hae Kyung ;
Konkashbaev, Anuar ;
Nicolae, Dan L. ;
Cox, Nancy J. ;
Flutre, Timothee ;
Wen, Xiaoquan ;
Stephens, Matthew .
SCIENCE, 2015, 348 (6235) :648-660
[4]   Characterizing Race/Ethnicity and Genetic Ancestry for 100,000 Subjects in the Genetic Epidemiology Research on Adult Health and Aging (GERA) Cohort [J].
Banda, Yambazi ;
Kvale, Mark N. ;
Hoffmann, Thomas J. ;
Hesselson, Stephanie E. ;
Ranatunga, Dilrini ;
Tang, Hua ;
Sabatti, Chiara ;
Croen, Lisa A. ;
Dispensa, Brad P. ;
Henderson, Mary ;
Iribarren, Carlos ;
Jorgenson, Eric ;
Kushi, Lawrence H. ;
Ludwig, Dana ;
Olberg, Diane ;
Quesenberry, Charles P., Jr. ;
Rowell, Sarah ;
Sadler, Marianne ;
Sakoda, Lori C. ;
Sciortino, Stanley ;
Shen, Ling ;
Smethurst, David ;
Somkin, Carol P. ;
Van Den Eeden, Stephen K. ;
Walter, Lawrence ;
Whitmer, Rachel A. ;
Kwok, Pui-Yan ;
Schaefer, Catherine ;
Risch, Neil .
GENETICS, 2015, 200 (04) :1285-+
[5]   Annotation of functional variation in personal genomes using RegulomeDB [J].
Boyle, Alan P. ;
Hong, Eurie L. ;
Hariharan, Manoj ;
Cheng, Yong ;
Schaub, Marc A. ;
Kasowski, Maya ;
Karczewski, Konrad J. ;
Park, Julie ;
Hitz, Benjamin C. ;
Weng, Shuai ;
Cherry, J. Michael ;
Snyder, Michael .
GENOME RESEARCH, 2012, 22 (09) :1790-1797
[6]   Ionizing radiation and the risk of brain and central nervous system tumors: a systematic review [J].
Braganza, Melissa Z. ;
Kitahara, Cari M. ;
de Gonzalez, Amy Berrington ;
Inskip, Peter D. ;
Johnson, Kimberly J. ;
Rajaraman, Preetha .
NEURO-ONCOLOGY, 2012, 14 (11) :1316-1324
[7]   Chapter 11: Genome-Wide Association Studies [J].
Bush, William S. ;
Moore, Jason H. .
PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (12)
[8]   Treatment and survival of patients with nonmalignant intracranial meningioma: results from the Surveillance, Epidemiology, and End Results Program of the National Cancer Institute Clinical article [J].
Cahill, Kevin S. ;
Claus, Elizabeth B. .
JOURNAL OF NEUROSURGERY, 2011, 115 (02) :259-267
[9]   The INTERPHONE study:: design, epidemiological methods, and description of the study population [J].
Cardis, Elisabeth ;
Richardson, Lesley ;
Deltour, Isabelle ;
Armstrong, Bruce ;
Feychting, Maria ;
Johansen, Christoffer ;
Kilkenny, Monique ;
McKinney, Patricia ;
Modan, Baruch ;
Sadetzki, Siegal ;
Schuez, Joachim ;
Swerdlow, Anthony ;
Vrijheid, Martine ;
Auvinen, Anssi ;
Berg, Gabriele ;
Blettner, Maria ;
Bowman, Joseph ;
Brown, Julianne ;
Chetrit, Angela ;
Christensen, Helle Collatz ;
Cook, Angus ;
Hepworth, Sarah ;
Giles, Graham ;
Hours, Martine ;
Iavarone, Ivano ;
Jarus-Hakak, Avital ;
Klaeboe, Lars ;
Krewski, Daniel ;
Lagorio, Susanna ;
Loenn, Stefan ;
Mann, Simon ;
McBride, Mary ;
Muir, Kenneth ;
Nadon, Louise ;
Parent, Marie-Elise ;
Pearce, Neil ;
Salminen, Tiina ;
Schoemaker, Minouk ;
Schlehofer, Brigitte ;
Siemiatycki, Jack ;
Taki, Masao ;
Takebayashi, Toru ;
Tynes, Tore ;
van Tongeren, Martie ;
Vecchia, Paolo ;
Wiart, Joe ;
Woodward, Alistair ;
Yamaguchi, Naohito .
EUROPEAN JOURNAL OF EPIDEMIOLOGY, 2007, 22 (09) :647-664
[10]   Defining the power limits of genome-wide association scan meta-analyses [J].
Chapman, Kay ;
Ferreira, Teresa ;
Morris, Andrew ;
Asimit, Jennifer ;
Zeggini, Eleftheria .
GENETIC EPIDEMIOLOGY, 2011, 35 (08) :781-789