Nematode parasite genes: what's in a name?

被引:42
作者
Beech, Robin N. [1 ]
Wolstenholme, Adrian J. [2 ]
Neveu, Cedric [3 ]
Dent, Joseph A. [4 ]
机构
[1] McGill Univ, Inst Parasitol, Ste Anne De Bellevue, PQ H9X 3V9, Canada
[2] Univ Georgia, Coll Vet Med, Dept Infect Dis, Athens, GA 30602 USA
[3] French Natl Inst Agr Res INRA, Infectiol Anim & Sante Publ UR1282, F-37380 Nouzilly, France
[4] McGill Univ, Dept Biol, Montreal, PQ H3A 1B1, Canada
关键词
CHLORIDE CHANNEL GENE; HAEMONCHUS-CONTORTUS; CAENORHABDITIS-ELEGANS; TELADORSAGIA-CIRCUMCINCTA; RECEPTOR SUBUNIT; LIGAND-BINDING; IVERMECTIN; SEQUENCE; CLONING; GENOME;
D O I
10.1016/j.pt.2010.04.003
中图分类号
R38 [医学寄生虫学]; Q [生物科学];
学科分类号
07 ; 0710 ; 09 ; 100103 ;
摘要
The central theme of Shakespeare's Romeo and Juliet is that names are meaningless, artificial constructs, detached from any underlying reality. By contrast, we argue that a well chosen gene name can concisely convey a wealth of relevant biological information. A consistent nomenclature adds transparency that can have a real impact on our understanding of gene function. Currently, genes in parasitic nematodes are often named ad hoc, leading to confusion that can be resolved by adherence to a nomenclature standard adapted from Caenorhabditis elegans. We demonstrate this with ligand-gated ion-channels and propose that the flood of genome data and differences between parasites and the free living C. elegans will require modification of the standard.
引用
收藏
页码:334 / 340
页数:7
相关论文
共 44 条
[1]   Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita [J].
Abad, Pierre ;
Gouzy, Jerome ;
Aury, Jean-Marc ;
Castagnone-Sereno, Philippe ;
Danchin, Etienne G. J. ;
Deleury, Emeline ;
Perfus-Barbeoch, Laetitia ;
Anthouard, Veronique ;
Artiguenave, Francois ;
Blok, Vivian C. ;
Caillaud, Marie-Cecile ;
Coutinho, Pedro M. ;
Dasilva, Corinne ;
De Luca, Francesca ;
Deau, Florence ;
Esquibet, Magali ;
Flutre, Timothe ;
Goldstone, Jared V. ;
Hamamouch, Noureddine ;
Hewezi, Tarek ;
Jaillon, Olivier ;
Jubin, Claire ;
Leonetti, Paola ;
Magliano, Marc ;
Maier, Tom R. ;
Markov, Gabriel V. ;
McVeigh, Paul ;
Pesole, Graziano ;
Poulain, Julie ;
Robinson-Rechavi, Marc ;
Sallet, Erika ;
Segurens, Beatrice ;
Steinbach, Delphine ;
Tytgat, Tom ;
Ugarte, Edgardo ;
van Ghelder, Cyril ;
Veronico, Pasqua ;
Baum, Thomas J. ;
Blaxter, Mark ;
Bleve-Zacheo, Teresa ;
Davis, Eric L. ;
Ewbank, Jonathan J. ;
Favery, Bruno ;
Grenier, Eric ;
Henrissat, Bernard ;
Jones, John T. ;
Laudet, Vincent ;
Maule, Aaron G. ;
Quesneville, Hadi ;
Rosso, Marie-Noelle .
NATURE BIOTECHNOLOGY, 2008, 26 (08) :909-915
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]   Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative [J].
Anisimova, Maria ;
Gascuel, Olivier .
SYSTEMATIC BIOLOGY, 2006, 55 (04) :539-552
[4]  
BEECH RN, MAL BIOCH P IN PRESS
[5]  
BIRD DM, 1994, J NEMATOL, V26, P138
[6]   Haemonchus contortus:: Selection at a glutamate-gated chloride channel gene in ivermectin- and moxidectin-selected strains [J].
Blackhall, WJ ;
Pouliot, JF ;
Prichard, RK ;
Beech, RN .
EXPERIMENTAL PARASITOLOGY, 1998, 90 (01) :42-48
[7]  
BRENNER S, 1974, GENETICS, V77, P71
[8]   Genome sequence of the nematode C-elegans:: A platform for investigating biology [J].
不详 .
SCIENCE, 1998, 282 (5396) :2012-2018
[9]   Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis [J].
Castresana, J .
MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (04) :540-552
[10]   High-affinity ivermectin binding to recombinant subunits of the Haemonchus contortus glutamate-gated chloride channel [J].
Cheeseman, CL ;
Delany, NS ;
Woods, DJ ;
Wolstenholme, AJ .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2001, 114 (02) :161-168