The complete chloroplast genome sequence ofVitis champinii

被引:2
作者
Xiang, Jiang [1 ]
Wei, Lingzhu [1 ]
Cheng, Jianhui [1 ]
Li, Mingshan [1 ]
Cui, Pengfei [1 ]
Wu, Jiang [1 ]
机构
[1] Zhejiang Acad Agr Sci, Inst Hort, Hangzhou 310021, Zhejiang, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
基金
中国国家自然科学基金;
关键词
Vitis champinii; chloroplast genome; rootstock; phylogenetic analysis;
D O I
10.1080/23802359.2020.1791005
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Vitis champiniiis a grapevine rootstock species and widely used in vineyards and in rootstock breeding programs for regions with high nematode populations or saline soils. Here, the complete chloroplast genome ofV. champiniiwas reported. The length of the chloroplast genome was 160,657 bp with a large single copy region of 89,217 bp, a small single copy region of 19,504 bp and two separated inverted regions of 51,936 bp, respectively. In total, 130 unique genes were identified of this genome, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicates thatV. champinii isclosely related toVitis acerifolia.
引用
收藏
页码:2864 / 2865
页数:2
相关论文
共 5 条
  • [1] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
  • [2] Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii) x Riparia Gloire (Vitis riparia)
    Lowe, K. M.
    Walker, M. A.
    [J]. THEORETICAL AND APPLIED GENETICS, 2006, 112 (08) : 1582 - 1592
  • [3] Nicolas D, 2016, NUCLEIC ACIDS RES, pkw955
  • [4] Genetic diversity in muscadine and American bunch grapes based on randomly amplified polymorphic DNA (RAPD) analysis
    Qu, XP
    Lu, J
    Lamikanra, O
    [J]. JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, 1996, 121 (06) : 1020 - 1023
  • [5] GeSeq - versatile and accurate annotation of organelle genomes
    Tillich, Michael
    Lehwark, Pascal
    Pellizzer, Tommaso
    Ulbricht-Jones, Elena S.
    Fischer, Axel
    Bock, Ralph
    Greiner, Stephan
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) : W6 - W11