The Multivariate Temporal Response Function (mTRF) Toolbox: A MATLAB Toolbox for Relating Neural Signals to Continuous Stimuli

被引:383
作者
Crosse, Michael J. [1 ,2 ,3 ,4 ]
Di Liberto, Giovanni M. [1 ,2 ]
Bednar, Adam [1 ,2 ,5 ,6 ]
Lalor, Edmund C. [1 ,2 ,5 ,6 ]
机构
[1] Trinity Coll Dublin, Trinity Ctr Bioengn, Sch Engn, Dublin, Ireland
[2] Trinity Coll Dublin, Trinity Coll Inst Neurosci, Dublin, Ireland
[3] Albert Einstein Coll Med, Dept Pediat, Bronx, NY 10467 USA
[4] Albert Einstein Coll Med, Dept Neurosci, Bronx, NY 10467 USA
[5] Univ Rochester, Dept Biomed Engn, Rochester, NY USA
[6] Univ Rochester, Dept Neurosci, Rochester, NY USA
来源
FRONTIERS IN HUMAN NEUROSCIENCE | 2016年 / 10卷
关键词
system identification; reverse correlation; stimulus reconstruction; sensory processing; EEG/MEG; PRIMARY AUDITORY-CORTEX; SENSORY PROCESSING DEFICITS; RECEPTIVE-FIELDS; CORTICAL REPRESENTATION; REVERSE-CORRELATION; NEURONAL RESPONSES; NATURAL STIMULI; SPEECH ENVELOPE; VISUAL NEURONS; COCKTAIL PARTY;
D O I
10.3389/fnhum.2016.00604
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Understanding how brains process sensory signals in natural environments is one of the key goals of twenty-first century neuroscience. While brain imaging and invasive electrophysiology will play key roles in this endeavor, there is also an important role to be played by noninvasive, macroscopic techniques with high temporal resolution such as electro- and magnetoencephalography. But challenges exist in determining how best to analyze such complex, time-varying neural responses to complex, time-varying and multivariate natural sensory stimuli. There has been a long history of applying system identification techniques to relate the firing activity of neurons to complex sensory stimuli and such techniques are now seeing increased application to EEG and MEG data. One particular example involves fitting a filter-often referred to as a temporal response function that describes a mapping between some feature(s) of a sensory stimulus and the neural response. Here, we first briefly review the history of these system identification approaches and describe a specific technique for deriving temporal response functions known as regularized linear regression. We then introduce a new open-source toolbox for performing this analysis. We describe how it can be used to derive (multivariate) temporal response functions describing a mapping between stimulus and response in both directions. We also explain the importance of regularizing the analysis and how this regularization can be optimized for a particular dataset. We then outline specifically how the toolbox implements these analyses and provide several examples of the types of results that the toolbox can produce. Finally, we consider some of the limitations of the toolbox and opportunities for future development and application.
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页数:14
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