The application of statistical physics to evolutionary biology

被引:296
作者
Sella, G [1 ]
Hirsh, AE
机构
[1] Hebrew Univ Jerusalem, Ctr Study Rational, IL-91404 Jerusalem, Israel
[2] Stanford Univ, Dept Biol Sci, Stanford, CA 94305 USA
关键词
genetic drift; genetic load; neutral theory; steady state; fundamental theorem of natural selection;
D O I
10.1073/pnas.0501865102
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A number of fundamental mathematical models of the evolutionary process exhibit dynamics that can be difficult to understand analytically. Here we show that a precise mathematical analogy can be drawn between certain evolutionary and thermodynamic systems, allowing application of the powerful machinery of statistical physics to analysis of a family of evolutionary models. Analytical results that follow directly from this approach include the steady-state distribution of fixed genotypes and the load in finite populations. The analogy with statistical physics also reveals that, contrary to a basic tenet of the nearly neutral theory of molecular evolution, the frequencies of adaptive and deleterious substitutions at steady state are equal. Finally, just as the free energy function quantitatively characterizes the balance between energy and entropy, a free fitness function provides an analytical expression for the balance between natural selection and stochastic drift.
引用
收藏
页码:9541 / 9546
页数:6
相关论文
共 40 条
[1]  
[Anonymous], 1999, AM J PHYS, DOI DOI 10.1119/1.19118
[2]   COMPOSITIONAL CONSTRAINTS AND GENOME EVOLUTION [J].
BERNARDI, G ;
BERNARDI, G .
JOURNAL OF MOLECULAR EVOLUTION, 1986, 24 (1-2) :1-11
[3]   THE HITCHHIKING EFFECT ON THE SITE FREQUENCY-SPECTRUM OF DNA POLYMORPHISMS [J].
BRAVERMAN, JM ;
HUDSON, RR ;
KAPLAN, NL ;
LANGLEY, CH ;
STEPHAN, W .
GENETICS, 1995, 140 (02) :783-796
[4]   The fractal nature of nature: power laws, ecological complexity and biodiversity [J].
Brown, JH ;
Gupta, VK ;
Li, BL ;
Milne, BT ;
Restrepo, C ;
West, GB .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2002, 357 (1421) :619-626
[5]  
CHARLESWORTH B, 1993, GENETICS, V134, P1289
[6]   The variant call format and VCFtools [J].
Danecek, Petr ;
Auton, Adam ;
Abecasis, Goncalo ;
Albers, Cornelis A. ;
Banks, Eric ;
DePristo, Mark A. ;
Handsaker, Robert E. ;
Lunter, Gerton ;
Marth, Gabor T. ;
Sherry, Stephen T. ;
McVean, Gilean ;
Durbin, Richard .
BIOINFORMATICS, 2011, 27 (15) :2156-2158
[7]   EVOLUTION IN A FLAT FITNESS LANDSCAPE [J].
DERRIDA, B ;
PELITI, L .
BULLETIN OF MATHEMATICAL BIOLOGY, 1991, 53 (03) :355-382
[8]   AN INTERPRETATION AND PROOF OF THE FUNDAMENTAL THEOREM OF NATURAL-SELECTION [J].
EWENS, WJ .
THEORETICAL POPULATION BIOLOGY, 1989, 36 (02) :167-180
[9]  
EWENS WJ, 1979, MATH POPULATIONS GEN
[10]  
Fisher R., 2005, TEACHING CHILDREN TH, V2nd