3D structure of the natural tetrameric form of human butyrylcholinesterase as revealed by cryoEM, SAXS and MD

被引:29
作者
Boyko, Konstantin M. [1 ,2 ]
Baymukhametov, Timur N. [2 ]
Chesnokov, Yury M. [2 ]
Hons, Michael [3 ]
Lushchekina, Sofya, V [4 ]
Konarev, Petr, V [2 ,5 ]
Lipkin, Alexey, V [2 ]
Vasiliev, Alexandre L. [2 ,5 ]
Masson, Patrick [6 ]
Popov, Vladimir O. [1 ,2 ]
Kovalchuk, Michail, V [2 ,5 ]
机构
[1] Russian Acad Sci, Res Ctr Biotechnol, Bach Inst Biochem, Leninsky Pr 33,Bld 2, Moscow 119071, Russia
[2] Kurchatov Inst, Natl Res Ctr, Akad Kurchatova Pl 1, Moscow 123182, Russia
[3] EMBL Grenoble, 71 Ave Martyrs,CS 90181, F-38042 Grenoble 9, France
[4] Russian Acad Sci, Emanuel Inst Biochem Phys, 4 Ul Kosygina, Moscow 119334, Russia
[5] Russian Acad Sci, Fed Sci Res Ctr Crystallog & Photon, Shubnikov Inst Crystallog, Leninsky Pr 59, Moscow 119333, Russia
[6] Kazan Fed Univ, Neuropharmacol Lab, 18 Kremlevskaia Ul, Kazan 48000, Russia
基金
俄罗斯科学基金会;
关键词
Butyrylcholinesterase; Acetylcholinesterase; Tetramer; cryoEM; Molecular dynamics; 3D structure; RAY SOLUTION SCATTERING; PLASMA BUTYRYLCHOLINESTERASE; BIOLOGICAL MACROMOLECULES; ACETYLCHOLINESTERASE; IDENTIFICATION; DYNAMICS; BEAMLINE; ADDUCTS; SYSTEM;
D O I
10.1016/j.biochi.2018.10.017
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Human plasma butyrylcholinesterase (BChE) is an endogenous bioscavenger that hydrolyzes numerous medicamentous and poisonous esters and scavenges potent organophosphorus nerve agents. BChE is thus a marker for the diagnosis of OP poisoning. It is also considered a therapeutic target against Alzheimer's disease. Although the X-ray structure of a partially deglycosylated monomer of human BChE was solved 15 years ago, all attempts to determine the 3D structure of the natural full-length glycosylated tetrameric human BChE have been unsuccessful so far. Here, a combination of three complementary structural methodsdsingle-particle cryo-electron microscopy, molecular dynamics and small-angle X-ray scatteringdwere implemented to elucidate the overall structural and spatial organization of the natural tetrameric human plasma BChE. A 7.6 A cryoEM map clearly shows the major features of the enzyme: a dimer of dimers with a nonplanar monomer arrangement, in which the interconnecting super helix complex PRAD-(WAT) 4-peptide C-terminal tail is located in the center of the tetramer, nearly perpendicular to its plane, and is plunged deep between the four subunits. Molecular dynamics simulations allowed optimization of the geometry of the molecule and reconstruction of the structural features invisible in the cryoEM density, i.e., glycan chains and glycan interdimer contact areas, as well as intermonomer disulfide bridges at the C-terminal tail. Finally, SAXS data were used to confirm the consistency of the obtained model with the experimental data. The tetramer organization of BChE is unique in that the four subunits are joined at their C-termini through noncovalent contacts with a short polyproline-rich peptide. This tetramer structure could serve as a model for the design of highly stable glycosylated tetramers. (c) 2018 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license.
引用
收藏
页码:196 / 205
页数:10
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