Protein sequence- and pH-dependent hydration probed by terahertz spectroscopy

被引:118
作者
Ebbinghaus, Simon [1 ]
Kim, Seung Joong [4 ]
Heyden, Matthias [1 ]
Yu, Xin [3 ]
Gruebele, Martin [2 ,4 ]
Leitner, David M. [3 ]
Havenith, Martina [1 ]
机构
[1] Ruhr Univ Bochum, Dept Phys Chem 2, D-44780 Bochum, Germany
[2] Univ Illinois, Dept Chem, Urbana, IL 61801 USA
[3] Univ Nevada, Dept Chem, Reno, NV 89557 USA
[4] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
关键词
D O I
10.1021/ja0746520
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Solvation free energy changes induced by protein folding and function are comparable to the corresponding overall free energy changes. Yet the structure, dynamics, and energetics of the protein itself have received more attention because they are easier to probe. Here we use terahertz (far-infrared) spectroscopy to directly probe the effect of mutations and solvent pH on the solvent shell-protein interaction. We study absorption spectra of the 80 residue viral protein (lambda)*6-85, a five helix bundle, in the 2.1-2.8 THz region. We find that the wild type at pH 7 has a much more pronounced effect on long-distance solvation water than mutants replacing a single polar glutamine side chain with aromatic residues (tyrosine, histidine). This is true both in the context of enhanced and decreased helix stability (via alanine and glycine substitutions). Bringing the wild type and mutants closer to the unfolding transition by lowering the pH likewise reduces the long distance solvation effect Thus terahertz spectroscopy can be used to probe both local and global solvation dynamics around proteins.
引用
收藏
页码:2374 / 2375
页数:2
相关论文
共 12 条
  • [1] Coupling between hydration layer dynamics and unfolding kinetics of HP-36
    Bandyopadhyay, Sanjoy
    Chakraborty, Sudip
    Bagchi, Biman
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2006, 125 (08)
  • [2] New p-Ge THz laser spectrometer for the study of solutions:: THz absorption spectroscopy of water -: art. no. 063110
    Bergner, A
    Heugen, U
    Bründermann, E
    Schwaab, G
    Havenith, M
    Chamberlin, DR
    Haller, EE
    [J]. REVIEW OF SCIENTIFIC INSTRUMENTS, 2005, 76 (06)
  • [3] Dynamics of water trapped between hydrophobic solutes
    Choudhury, N
    Pettitt, BM
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (13) : 6422 - 6429
  • [4] An extended dynamical hydration shell around proteins
    Ebbinghaus, Simon
    Kim, Seung Joong
    Heyden, Matthias
    Yu, Xin
    Heugen, Udo
    Gruebele, Martin
    Leitner, David M.
    Havenith, Martina
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (52) : 20749 - 20752
  • [5] Solute-induced retardation of water dynamics probed directly by terahertz spectroscopy
    Heugen, U.
    Schwaab, G.
    Bruendermann, E.
    Heyden, M.
    Yu, X.
    Leitner, D. M.
    Havenith, M.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (33) : 12301 - 12306
  • [6] KIM SJ, UNPUB BIOPHYS J
  • [7] Principal component analysis of fast-folding λ-repressor mutants
    Maisuradze, GG
    Leitner, DM
    [J]. CHEMICAL PHYSICS LETTERS, 2006, 421 (1-3) : 5 - 10
  • [8] Biological water: Femtosecond dynamics of macromolecular hydration
    Pal, SK
    Peon, J
    Bagchi, B
    Zewail, AH
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (48) : 12376 - 12395
  • [9] Evidence for anomalous hydration dynamics near a model hydrophobic peptide
    Russo, D
    Murarka, RK
    Hura, G
    Verschell, E
    Copley, JRA
    Head-Gordon, T
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2004, 108 (51) : 19885 - 19893
  • [10] Protein flexibility and conformational state: A comparison of collective vibrational modes of wild-type and D96N bacteriorhodopsin
    Whitmire, SE
    Wolpert, D
    Markelz, AG
    Hillebrecht, JR
    Galan, J
    Birge, RR
    [J]. BIOPHYSICAL JOURNAL, 2003, 85 (02) : 1269 - 1277