Subtilisin surface properties and crystal growth kinetics

被引:4
作者
Pan, XJ
Bott, R
Glatz, CE
机构
[1] Iowa State Univ, Dept Chem Engn, Ames, IA 50011 USA
[2] Genencor Int Inc, Dept Res & Dev, Palo Alto, CA 94304 USA
基金
美国国家科学基金会;
关键词
surface structure; solvents; growth models; single crystal growth; proteins;
D O I
10.1016/S0022-0248(03)01178-3
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
Our previous study showed that the solubility and crystal growth rate of the protein subtilisin changed with the substitution of small numbers of surface amino acid residues. Structural and energetic comparisons of crystal structures of two subtilisin mutants were conducted to explore the reason for changes in the growth rate of subtilisin crystals. Unique lattice contact patches were determined for the two mutants. The loss of solvent accessible surface area (ASA), the average hydrophobicity and the number of hydrogen bonds and salt bridges were calculated to quantify surface properties of the contact patches. The structural comparison showed that the three amino acid mutations (Purafecr(R) --> Properase(R)) are all in contact patches and provide extra atomic contacts. For Properase(R) subtilisin, the number of contacting residues and the loss of ASA increased. Binding energetic calculations, based on the detailed protein structures, were performed to determine non-electrostatic interaction contributions for the required crystallographic orientation and the number of energetically favored, false-binding orientations. The agreement and disparity between molecular structure and macroscopic crystallization behavior are discussed. (C) 2003 Elsevier Science B.V. All rights reserved.
引用
收藏
页码:492 / 502
页数:11
相关论文
共 37 条
[1]   Calculation of short-range interactions between proteins [J].
Asthagiri, D ;
Neal, BL ;
Lenhoff, AM .
BIOPHYSICAL CHEMISTRY, 1999, 78 (03) :219-231
[2]   Role of competitive interactions in growth rate trends of subtilisin s88 crystals [J].
Asthagiri, D ;
Lenhoff, AM ;
Gallagher, DT .
JOURNAL OF CRYSTAL GROWTH, 2000, 212 (3-4) :543-554
[3]   ION-PAIRS IN PROTEINS [J].
BARLOW, DJ ;
THORNTON, JM .
JOURNAL OF MOLECULAR BIOLOGY, 1983, 168 (04) :867-885
[4]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[5]  
*CCP4 SERC UK COLL, 1979, 4 CCP4 SERC UK COLL
[6]   CONTRIBUTION OF BURIED HYDROGEN-BONDS TO PROTEIN STABILITY - THE CRYSTAL-STRUCTURES OF 2 BARNASE MUTANTS [J].
CHEN, YW ;
FERSHT, AR ;
HENRICK, K .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 234 (04) :1158-1170
[7]  
CUDNEY B, 1994, AM BIOTECHNOL LAB, V12, P42
[8]   THE DOUBLE CUBIC LATTICE METHOD - EFFICIENT APPROACHES TO NUMERICAL-INTEGRATION OF SURFACE-AREA AND VOLUME AND TO DOT SURFACE CONTOURING OF MOLECULAR ASSEMBLIES [J].
EISENHABER, F ;
LIJNZAAD, P ;
ARGOS, P ;
SANDER, C ;
SCHARF, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1995, 16 (03) :273-284
[9]   IMPROVED STRATEGY IN ANALYTIC SURFACE CALCULATION FOR MOLECULAR-SYSTEMS - HANDLING OF SINGULARITIES AND COMPUTATIONAL-EFFICIENCY [J].
EISENHABER, F ;
ARGOS, P .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1993, 14 (11) :1272-1280
[10]   RESPONSE OF A PROTEIN-STRUCTURE TO CAVITY-CREATING MUTATIONS AND ITS RELATION TO THE HYDROPHOBIC EFFECT [J].
ERIKSSON, AE ;
BAASE, WA ;
ZHANG, XJ ;
HEINZ, DW ;
BLABER, M ;
BALDWIN, EP ;
MATTHEWS, BW .
SCIENCE, 1992, 255 (5041) :178-183