WILMA - automated annotation of protein sequences

被引：8
|
作者：
Prlic, A
Domingues, FS
Lackner, P
Sippl, MJ
机构：
[1] Salzburg Univ, Inst Chem & Biochem, Ctr Appl Mol Engn, A-5020 Salzburg, Austria
[2] Max Planck Inst Informat, D-66123 Saarbrucken, Germany
来源：
BIOINFORMATICS | 2004年 / 20卷 / 01期
基金：
奥地利科学基金会;
关键词：
D O I：
10.1093/bioinformatics/btg380
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Large-scale annotation of sets of proteins is a frequently occurring task in association with genome sequencing projects. Here, we present an automated platform for the functional annotation of large sets of protein sequences. Various bioinformatics tools are used to achieve a comprehensive description of protein sequences and to link these results to standard Gene Ontology descriptors for molecular function, biological processes and cellular components. Access to the annotation is provided via a web-interface and database queries. These interfaces allow to formulate proteome wide queries as well as the investigation of details of individual results. WILMA annotations of the proteomes of Homo sapiens, Mus musculus, Arabidopsis thaliana and Caenorhabditis elegans are accessible at http://www.came.sbg.ac.at/wilma/.
引用
收藏
页码：127 / 128
页数：2
相关论文
共 50 条
  • [1] Statistically rigorous automated protein annotation
    Krebs, WG
    Bourne, PE
    BIOINFORMATICS, 2004, 20 (07) : 1066 - 1073
  • [2] Accurate annotation of protein coding sequences with IDTAXA
    Cooley, Nicholas P.
    Wright, Erik S.
    NAR GENOMICS AND BIOINFORMATICS, 2021, 3 (03)
  • [3] TRAP: automated classification, quantification and annotation of tandemly repeated sequences
    Sobreira, TJP
    Durham, AM
    Gruber, A
    BIOINFORMATICS, 2006, 22 (03) : 361 - 362
  • [4] AUTOMATED PROTEIN SEQUENCES CYCLE ON
    NOBLE, D
    ANALYTICAL CHEMISTRY, 1994, 66 (24) : A1239 - A1242
  • [5] An automated protein annotation filter for integrating web-based annotation tools
    Saravanan, Vijayakumar
    Shanmughavel, Primanayagam
    BIOINFORMATION, 2007, 2 (02) : 76 - 77
  • [6] Probabilistic annotation of protein sequences based on functional classifications
    Emmanuel D Levy
    Christos A Ouzounis
    Walter R Gilks
    Benjamin Audit
    BMC Bioinformatics, 6
  • [7] An automated annotation tool for genomic DNA sequences using GeneScan and BLAST
    Lynn, AM
    Jain, CK
    Kosalai, K
    Barman, P
    Thakur, N
    Batra, H
    Bhattacharya, A
    JOURNAL OF GENETICS, 2001, 80 (01) : 9 - 16
  • [8] Probabilistic annotation of protein sequences based on functional classifications
    Levy, ED
    Ouzounis, CA
    Gilks, WR
    Audit, B
    BMC BIOINFORMATICS, 2005, 6 (1)
  • [9] An automated annotation tool for genomic DNA sequences using GeneScan and BLAST
    Andrew M. Lynn
    Chakresh Kumar Jain
    K. Kosalai
    Pranjan Barman
    Nupur Thakur
    Harish Batra
    Alok Bhattacharya
    Journal of Genetics, 2001, 80 : 9 - 16
  • [10] Modeling the percolation of annotation errors in a database of protein sequences
    Gilks, WR
    Audit, B
    De Angelis, D
    Tsoka, S
    Ouzounis, CA
    BIOINFORMATICS, 2002, 18 (12) : 1641 - 1649
12345