Circular RNA: Biosynthesis in vitro

被引:49
作者
Chen, Xinjie [1 ]
Lu, Yuan [1 ]
机构
[1] Tsinghua Univ, Dept Chem Engn, Minist Educ, Key Lab Ind Biocatalysis, Beijing, Peoples R China
基金
北京市自然科学基金; 中国国家自然科学基金; 国家重点研发计划;
关键词
circular RNA; RNA synthesis; in vitro transcription; enzymatic ligation; ligase; permuted intron-exon; HAIRPIN RIBOZYME; MESSENGER-RNA; DNA DUPLEXES; EXON; TRANSLATION; SEQUENCE; LIGASE; TRANSCRIPTS; INTRON; SELF;
D O I
10.3389/fbioe.2021.787881
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Circular RNA (circRNA) is a unique type of noncoding RNA molecule. Compared with traditional linear RNA, circRNA is a covalently closed circle produced by a process called backsplicing. CircRNA is abundant in many cells and has rich functions in cells, such as acting as miRNA sponge, protein sponge, protein scaffold, and mRNA regulator. With the continuous development of circRNA study, circRNA has also played an important role in medical applications, including circRNA vaccines and gene therapy. In this review, we illustrate the synthesis of circRNAs in vitro. We focus on biological ligation methods, such as enzymatic ligation from the bacteriophage T4 and ribozyme method. In addition, we summarize the current challenges in the design, synthesis, application, and production of circRNAs, and propose possible solutions in the future. CircRNA is expected to play an essential role in basic research and medical applications.
引用
收藏
页数:11
相关论文
共 92 条
[1]   Identification of HuR target circular RNAs uncovers suppression of PABPN1 translation by CircPABPN1 [J].
Abdelmohsen, Kotb ;
Panda, Amaresh C. ;
Munk, Rachel ;
Grammatikakis, Ioannis ;
Dudekula, Dawood B. ;
De, Supriyo ;
Kim, Jiyoung ;
Noh, Ji Heon ;
Kim, Kyoung Mi ;
Martindale, Jennifer L. ;
Gorospe, Myriam .
RNA BIOLOGY, 2017, 14 (03) :361-369
[2]  
Abe N, 2018, METHODS MOL BIOL, V1724, P181, DOI 10.1007/978-1-4939-7562-4_15
[3]   SOME YEAST MITOCHONDRIAL RNAS ARE CIRCULAR [J].
ARNBERG, AC ;
VANOMMEN, GJB ;
GRIVELL, LA ;
VANBRUGGEN, EFJ ;
BORST, P .
CELL, 1980, 19 (02) :313-319
[4]   circRNA Biogenesis Competes with Pre-mRNA Splicing [J].
Ashwal-Fluss, Reut ;
Meyer, Markus ;
Pamudurti, Nagarjuna Reddy ;
Ivanov, Andranik ;
Bartok, Osnat ;
Hanan, Mor ;
Evantal, Naveh ;
Memczak, Sebastian ;
Rajewsky, Nikolaus ;
Kadener, Sebastian .
MOLECULAR CELL, 2014, 56 (01) :55-66
[5]   Circular RNAs: analysis, expression and potential functions [J].
Barrett, Steven P. ;
Salzman, Julia .
DEVELOPMENT, 2016, 143 (11) :1838-1847
[6]   Circular RNA biogenesis can proceed through an exon-containing lariat precursor [J].
Barrett, Steven P. ;
Wang, Peter L. ;
Salzman, Julia .
ELIFE, 2015, 4 :1-18
[7]  
Beckert B, 2011, METHODS MOL BIOL, V703, P29, DOI 10.1007/978-1-59745-248-9_3
[8]   Direct comparison of nick-joining activity of the nucleic acid ligases from bacteriophage T4 [J].
Bullard, Desmond R. ;
Bowater, Richard P. .
BIOCHEMICAL JOURNAL, 2006, 398 :135-144
[9]   CIRCULAR TRANSCRIPTS OF THE TESTIS-DETERMINING GENE SRY IN ADULT-MOUSE TESTIS [J].
CAPEL, B ;
SWAIN, A ;
NICOLIS, S ;
HACKER, A ;
WALTER, M ;
KOOPMAN, P ;
GOODFELLOW, P ;
LOVELLBADGE, R .
CELL, 1993, 73 (05) :1019-1030
[10]   INITIATION OF PROTEIN-SYNTHESIS BY THE EUKARYOTIC TRANSLATIONAL APPARATUS ON CIRCULAR RNAS [J].
CHEN, CY ;
SARNOW, P .
SCIENCE, 1995, 268 (5209) :415-417