We have used design of experiments (DOE) and systematic variance to efficiently explore glutathione transferase substrate specificities caused by amino acid substitutions. Amino acid substitutions selected using phylogenetic analysis were synthetically combined using a DOE design to create an information-rich set of gene variants, termed infologs. We used machine learning to identify and quantify protein sequence-function relationships against 14 different substrates The resulting models were quantitative and predictive, serving as a guide for engineering of glutathione transferase activity toward a diverse set of herbicides Predictive quantitative models like those presented here have broad applicability for bioengineering.
机构:
Univ Calif San Francisco, Program Biol & Med Informat, San Francisco, CA 94158 USAUniv Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Atkinson, Holly J.
Babbitt, Patricia C.
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Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94158 USAUniv Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USAUniv Washington, Dept Biochem, Seattle, WA 98195 USA
机构:
FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Chen, Fei
Gaucher, Eric A.
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FfAME, Gainesville, FL 32601 USA
Georgia Inst Technol, Sch Biol, Sch Chem, Atlanta, GA 30332 USA
Georgia Inst Technol, Parker H Petit Inst Bioengn & Biosci, Atlanta, GA 30332 USAFfAME, Gainesville, FL 32601 USA
Gaucher, Eric A.
Leal, Nicole A.
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机构:
FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Leal, Nicole A.
Hutter, Daniel
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FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Hutter, Daniel
Havemann, Stephanie A.
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h-index: 0
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FfAME, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Havemann, Stephanie A.
Govindarajan, Sridhar
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DNA 2 0 Inc, Menlo Pk, CA 94025 USAFfAME, Gainesville, FL 32601 USA
Govindarajan, Sridhar
Ortlund, Eric A.
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Emory Univ, Dept Biochem, Sch Med, Atlanta, GA 30322 USAFfAME, Gainesville, FL 32601 USA
Ortlund, Eric A.
Benner, Steven A.
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h-index: 0
机构:
FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
机构:
Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Ehren, Jennifer
Govindarajan, Sridhar
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DNA2 0 Inc, Menlo Pk, CA USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Govindarajan, Sridhar
Moron, Belen
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Stanford Univ, Dept Chem, Stanford, CA 94305 USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Moron, Belen
Minshull, Jeremy
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DNA2 0 Inc, Menlo Pk, CA USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Minshull, Jeremy
Khosla, Chaitan
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Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Stanford Univ, Dept Chem, Stanford, CA 94305 USA
Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
机构:
Univ Calif San Francisco, Program Biol & Med Informat, San Francisco, CA 94158 USAUniv Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Atkinson, Holly J.
Babbitt, Patricia C.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
Univ Calif San Francisco, Dept Pharmaceut Chem, San Francisco, CA 94158 USAUniv Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94158 USA
机构:
Univ Washington, Dept Biochem, Seattle, WA 98195 USA
Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USAUniv Washington, Dept Biochem, Seattle, WA 98195 USA
机构:
FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Chen, Fei
Gaucher, Eric A.
论文数: 0引用数: 0
h-index: 0
机构:
FfAME, Gainesville, FL 32601 USA
Georgia Inst Technol, Sch Biol, Sch Chem, Atlanta, GA 30332 USA
Georgia Inst Technol, Parker H Petit Inst Bioengn & Biosci, Atlanta, GA 30332 USAFfAME, Gainesville, FL 32601 USA
Gaucher, Eric A.
Leal, Nicole A.
论文数: 0引用数: 0
h-index: 0
机构:
FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Leal, Nicole A.
Hutter, Daniel
论文数: 0引用数: 0
h-index: 0
机构:
FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Hutter, Daniel
Havemann, Stephanie A.
论文数: 0引用数: 0
h-index: 0
机构:
FfAME, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
Havemann, Stephanie A.
Govindarajan, Sridhar
论文数: 0引用数: 0
h-index: 0
机构:
DNA 2 0 Inc, Menlo Pk, CA 94025 USAFfAME, Gainesville, FL 32601 USA
Govindarajan, Sridhar
Ortlund, Eric A.
论文数: 0引用数: 0
h-index: 0
机构:
Emory Univ, Dept Biochem, Sch Med, Atlanta, GA 30322 USAFfAME, Gainesville, FL 32601 USA
Ortlund, Eric A.
Benner, Steven A.
论文数: 0引用数: 0
h-index: 0
机构:
FfAME, Gainesville, FL 32601 USA
TWIST, Gainesville, FL 32601 USAFfAME, Gainesville, FL 32601 USA
机构:
Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Ehren, Jennifer
Govindarajan, Sridhar
论文数: 0引用数: 0
h-index: 0
机构:
DNA2 0 Inc, Menlo Pk, CA USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Govindarajan, Sridhar
Moron, Belen
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Chem, Stanford, CA 94305 USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Moron, Belen
Minshull, Jeremy
论文数: 0引用数: 0
h-index: 0
机构:
DNA2 0 Inc, Menlo Pk, CA USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Minshull, Jeremy
Khosla, Chaitan
论文数: 0引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Chem Engn, Stanford, CA 94305 USA
Stanford Univ, Dept Chem, Stanford, CA 94305 USA
Stanford Univ, Dept Biochem, Stanford, CA 94305 USAStanford Univ, Dept Chem Engn, Stanford, CA 94305 USA