On the arrangement of chromophores in light harvesting complexes: chance versus design

被引:7
作者
Claridge, Kirsten [1 ]
Padula, Daniele [1 ]
Troisi, Alessandro [1 ]
机构
[1] Univ Liverpool, Dept Chem, Liverpool L69 7ZD, Merseyside, England
基金
英国工程与自然科学研究理事会; 欧洲研究理事会;
关键词
QUANTUM COHERENCE; ENERGY-TRANSFER; PROTEIN; CAROTENOIDS; FLUCTUATIONS; AUTOMATION; SIMULATION; SPECTRA; RANGE; TIME;
D O I
10.1039/c9fd00045c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We used a homogeneous computational approach to derive the excitonic Hamiltonian for five light harvesting complexes containing only one type of chromophore and compare them in terms of statistical descriptors. We then studied the approximate exciton dynamics for the five complexes introducing a measure, the (averaged and time-dependent) inverse participation ratio, that enables the comparison between very diverse complexes on the same ground. We find that the global dynamics are very similar across the set of systems despite the variety of geometric structures of the complexes. In particular, the dynamics of four out of five light harvesting complexes are barely distinguishable with a small variation from the norm seen only for the Fenna-Matthews-Olson complex. We use the information from the realistic Hamiltonians to build a reduced model system that shows how the global dynamics are ultimately dominated by a single parameter, the degree of localization of the excitonic Hamiltonian eigenstates. Considering the physically plausible range of system parameters, the reduced model explains why the dynamics are so similar across most light harvesting complexes containing a single type of chromophore regardless of the detailed pattern of the inter-chromophore excitonic coupling.
引用
收藏
页码:133 / 149
页数:17
相关论文
共 65 条
  • [1] [Anonymous], 1965, Advances in Magnetic and Optical Resonance
  • [2] [Anonymous], 2002, Molecular Mechanisms of Photosynthesis
  • [3] Geometry, Supertransfer, and Optimality in the Light Harvesting of Purple Bacteria
    Baghbanzadeh, Sima
    Kassal, Ivan
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2016, 7 (19): : 3804 - 3811
  • [4] Robustness, efficiency, and optimality in the Fenna-Matthews-Olson photosynthetic pigment-protein complex
    Baker, Lewis A.
    Habershon, Scott
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2015, 143 (10)
  • [5] CONCENTRATION QUENCHING IN CHLOROPHYLL
    BEDDARD, GS
    PORTER, G
    [J]. NATURE, 1976, 260 (5549) : 366 - 367
  • [6] Local protein solvation drives direct down-conversion in phycobiliprotein PC645 via incoherent vibronic transport
    Blau, Samuel M.
    Bennett, Doran I. G.
    Kreisbeck, Christoph
    Scholes, Gregory D.
    Aspuru-Guzik, Alan
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (15) : E3342 - E3350
  • [7] Phonon-mediated excitation energy transfer in a detuned multi-sites system
    Chen, Hao
    Wang, Xin
    Han, Cui-Ming
    Li, Hong-Rong
    [J]. JOURNAL OF PHYSICS B-ATOMIC MOLECULAR AND OPTICAL PHYSICS, 2019, 52 (07)
  • [8] Developing Consistent Molecular Dynamics Force Fields for Biological Chromophores via Force Matching
    Claridge, Kirsten
    Troisi, Alessandro
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2019, 123 (02) : 428 - 438
  • [9] How fine-tuned for energy transfer is the environmental noise produced by proteins around biological chromophores?
    Claridge, Kirsten
    Padula, Daniele
    Troisi, Alessandro
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2018, 20 (25) : 17279 - 17288
  • [10] Coupling to Charge Transfer States is the Key to Modulate the Optical Bands for Efficient Light Harvesting in Purple Bacteria
    Cupellini, Lorenzo
    Caprasecca, Stefano
    Guido, Ciro A.
    Mueh, Frank
    Renger, Thomas
    Mennucci, Benedetta
    [J]. JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2018, 9 (23): : 6892 - 6899