Genome-wide association studies of grain quality traits in maize

被引:36
作者
Zheng, Yunxiao [1 ,2 ,3 ]
Yuan, Fan [1 ,2 ,3 ]
Huang, Yaqun [1 ,2 ,3 ]
Zhao, Yongfeng [1 ,2 ,3 ]
Jia, Xiaoyan [1 ,2 ,3 ]
Zhu, Liying [1 ,2 ,3 ]
Guo, Jinjie [1 ,2 ,3 ]
机构
[1] Hebei Agr Univ, Coll Agron, Baoding 071001, Hebei, Peoples R China
[2] Natl Maize Improvement Ctr, Hebei Subctr, Baoding 071001, Hebei, Peoples R China
[3] State Key Lab North China Crop Improvement & Regu, Baoding 071001, Hebei, Peoples R China
关键词
STARCH CONTENT; KERNEL OIL; IDENTIFICATION; PROTEIN; GENE; QTL; POPULATIONS; INCREASES; SEQUENCE; F-23;
D O I
10.1038/s41598-021-89276-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
High quality is the main goal of today's maize breeding and the investigation of grain quality traits would help to breed high-quality varieties in maize. In this study, genome-wide association studies in a set of 248 diverse inbred lines were performed with 83,057 single nucleotide polymorphisms (SNPs), and five grain quality traits were investigated in diverse environments for two years. The results showed that maize inbred lines showed substantial natural variations of grain quality and these traits showed high broad-sense heritability. A total of 49 SNPs were found to be significantly associated with grain quality traits. Among these SNPs, four co-localized sites were commonly detected by multiple traits. The candidate genes which were searched for can be classified into 11 biological processes, 13 cellular components, and 6 molecular functions. Finally, we found 29 grain quality-related genes. These genes and the SNPs identified in the study would offer essential information for high-quality varieties breeding programs in maize.
引用
收藏
页数:12
相关论文
共 56 条
[1]  
BUDINVERNEUIL A, 2007, TRENDS PLANT SCI, V7, P2038, DOI DOI 10.1002/PMIC.200600773
[2]   The essential nature of sphingolipids in plants as revealed by the functional identification and characterization of the Arabidopsis LCB1 subunit of serine palmitoyltransferase [J].
Chen, Ming ;
Han, Gongshe ;
Dietrich, Charles R. ;
Dunn, Teresa M. ;
Cahoon, Edgar B. .
PLANT CELL, 2006, 18 (12) :3576-3593
[3]  
DELCUETO J, 2018, EUPHYTICA, V126, P163, DOI DOI 10.1016/J.PLAPHY.2017.12.028
[4]   A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species [J].
Elshire, Robert J. ;
Glaubitz, Jeffrey C. ;
Sun, Qi ;
Poland, Jesse A. ;
Kawamoto, Ken ;
Buckler, Edward S. ;
Mitchell, Sharon E. .
PLOS ONE, 2011, 6 (05)
[5]  
EWALD R, 2014, BIOCHEMISTRY-US, V16, P35, DOI DOI 10.1111/PLB.12028
[6]  
GACHON C, 2005, PLANT CELL, V10, P542, DOI DOI 10.1016/J.TPLANTS.2005.09.007
[7]   A shrunken-2 Transgene Increases Maize Yield by Acting in Maternal Tissues to Increase the Frequency of Seed Development [J].
Hannah, L. Curtis ;
Futch, Brandon ;
Bing, James ;
Shaw, Janine R. ;
Boehlein, Susan ;
Stewart, Jon D. ;
Beiriger, Robert ;
Georgelis, Nikolaos ;
Greene, Thomas .
PLANT CELL, 2012, 24 (06) :2352-2363
[8]  
HENDERSON C, 1975, CROP SCI, V31, P423, DOI DOI 10.2307/2529430
[9]   Multigene engineering of starch biosynthesis in maize endosperm increases the total starch content and the proportion of amylose [J].
Jiang, Lili ;
Yu, Xiaoming ;
Qi, Xin ;
Yu, Qian ;
Deng, Sen ;
Bai, Bing ;
Li, Ning ;
Zhang, Ai ;
Zhu, Changfu ;
Liu, Bao ;
Pang, Jinsong .
TRANSGENIC RESEARCH, 2013, 22 (06) :1133-1142
[10]  
KAUR G, 2017, PLANT BIOTECHNOL J, V16, P1918, DOI DOI 10.1080/15384101.2017.1363937