Rapid Identification of Bio-Molecules Applied for Detection of Biosecurity Agents Using Rolling Circle Amplification

被引:40
作者
Goransson, Jenny [1 ,3 ]
Ke, Rongqin [1 ]
Nong, Rachel Yuan [1 ]
Howell, W. Mathias [1 ]
Karman, Anna [2 ,3 ]
Grawe, Jan [3 ]
Stenberg, Johan [3 ]
Granberg, Malin [4 ]
Elgh, Magnus [3 ]
Herthnek, David [1 ]
Wikstrom, Per [4 ]
Jarvius, Jonas [1 ,3 ]
Nilsson, Mats [1 ]
机构
[1] Uppsala Univ, SciLifeLab, Dept Immunol Genet & Pathol, Rudbeck Lab, Uppsala, Sweden
[2] Dag Hammarskjolds Vag, Olink AB, Uppsala, Sweden
[3] Dag Hammarskjolds, Q Linea AB, Uppsala, Sweden
[4] Swedish Def Res Agcy, Umea, Sweden
基金
瑞典研究理事会;
关键词
BACILLUS-ANTHRACIS; FRANCISELLA-TULARENSIS; PROXIMITY LIGATION; MAGNETIC BIOSENSOR; PROTEIN-DETECTION; YERSINIA-PESTIS; PADLOCK PROBES; IN-SITU; ASSAYS; PCR;
D O I
10.1371/journal.pone.0031068
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Detection and identification of pathogens in environmental samples for biosecurity applications are challenging due to the strict requirements on specificity, sensitivity and time. We have developed a concept for quick, specific and sensitive pathogen identification in environmental samples. Target identification is realized by padlock- and proximity probing, and reacted probes are amplified by RCA (rolling-circle amplification). The individual RCA products are labeled by fluorescence and enumerated by an instrument, developed for sensitive and rapid digital analysis. The concept is demonstrated by identification of simili biowarfare agents for bacteria (Escherichia coli and Pantoea agglomerans) and spores (Bacillus atrophaeus) released in field.
引用
收藏
页数:9
相关论文
共 36 条
[11]   Multiplexed protein detection by proximity ligation for cancer biomarker validation [J].
Fredriksson, Simon ;
Dixon, William ;
Ji, Hanlee ;
Koong, Albert C. ;
Mindrinos, Michael ;
Davis, Ronald W. .
NATURE METHODS, 2007, 4 (04) :327-329
[12]   Real-Time PCR Assay for Detection of a New Simulant for Poxvirus Biothreat Agents [J].
Garnier, Laurence ;
Gaudin, Jean-Christophe ;
Bensadoun, Paul ;
Rebillat, Isabelle ;
Morel, Yannick .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2009, 75 (06) :1614-1620
[13]   Reliable detection of Bacillus anthracis, Francisella tularensis and Yersinia pestis by using multiplex qPCR including internal controls for nucleic acid extraction and amplification [J].
Janse, Ingmar ;
Hamidjaja, Raditijo A. ;
Bok, Jasper M. ;
van Rotterdam, Bart J. .
BMC MICROBIOLOGY, 2010, 10
[14]   Digital quantification using amplified single-molecule detection [J].
Jarvius, Jonas ;
Melin, Jonas ;
Goransson, Jenny ;
Stenberg, Johan ;
Fredriksson, Simon ;
Gonzalez-Rey, Carlos ;
Bertilsson, Stefan ;
Nilsson, Mats .
NATURE METHODS, 2006, 3 (09) :725-727
[15]   Sensitive detection of Aβ protofibrils by proximity ligation - relevance for Alzheimer's disease [J].
Kamali-Moghaddam, Masood ;
Pettersson, Frida Ekholm ;
Wu, Di ;
Englund, Hillevi ;
Darmanis, Spyros ;
Lord, Anna ;
Tavoosidana, Gholamreza ;
Sehlin, Dag ;
Gustafsdottir, Sigrun ;
Nilsson, Lars N. G. ;
Lannfelt, Lars ;
Landegren, Ulf .
BMC NEUROSCIENCE, 2010, 11
[16]   Rapid, high-throughput, culture-based PCR methods to analyze samples for viable spores of Bacillus anthracis and its surrogates [J].
Kane, S. R. ;
Letant, S. E. ;
Alfaro, T. M. ;
Krauter, P. W. ;
Mahnke, R. ;
Legler, T. C. ;
Raber, E. .
JOURNAL OF MICROBIOLOGICAL METHODS, 2009, 76 (03) :278-284
[17]   Padlock and proximity probes for in situ and array-based analyses:: tools for the post-genomic era [J].
Landegren, U ;
Dahl, F ;
Nilsson, M ;
Fredriksson, S ;
Banér, J ;
Gullberg, M ;
Jarvius, J ;
Gustafsdottir, S ;
Söderberg, O ;
Ericsson, O ;
Stenberg, J ;
Schallmeiner, E .
COMPARATIVE AND FUNCTIONAL GENOMICS, 2003, 4 (05) :525-530
[18]   A LIGASE-MEDIATED GENE DETECTION TECHNIQUE [J].
LANDEGREN, U ;
KAISER, R ;
SANDERS, J ;
HOOD, L .
SCIENCE, 1988, 241 (4869) :1077-1080
[19]   Mutation detection and single-molecule counting using isothermal rolling-circle amplification [J].
Lizardi, PM ;
Huang, XH ;
Zhu, ZR ;
Bray-Ward, P ;
Thomas, DC ;
Ward, DC .
NATURE GENETICS, 1998, 19 (03) :225-232
[20]   Multiplexed Homogeneous Proximity Ligation Assays for High-throughput Protein Biomarker Research in Serological Material [J].
Lundberg, Martin ;
Thorsen, Stine Buch ;
Assarsson, Erika ;
Villablanca, Andrea ;
Tran, Bonnie ;
Gee, Nick ;
Knowles, Mick ;
Nielsen, Birgitte Sander ;
Gonzalez Couto, Eduardo ;
Martin, Roberto ;
Nilsson, Olle ;
Fermer, Christian ;
Schlingemann, Joerg ;
Christensen, Ib Jarle ;
Nielsen, Hans-Jorgen ;
Ekstrom, Bjorn ;
Andersson, Claes ;
Gustafsson, Mats ;
Brunner, Nils ;
Stenvang, Jan ;
Fredriksson, Simon .
MOLECULAR & CELLULAR PROTEOMICS, 2011, 10 (04)