Molecular dynamics of complex systems: Non-Hamiltonian, constrained, quantum-classical

被引:0
作者
Ciccotti, G [1 ]
Kalibaeva, G [1 ]
机构
[1] Univ Roma La Sapienza, INFM, Rome, Italy
来源
NOVEL METHODS IN SOFT MATTER SIMULATIONS | 2004年 / 640卷
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中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
A theoretically sound and computationally tractable treatment for non-Hamiltonian molecular dynamics is needed for simulations of complex systems. Here, statistical mechanics of non-Hamiltonian systems is derived and it is applied to Nose-Hoover and related isostats. Then, the most rigorous family of algorithms for integration of equations of motion, Trotter-derived unitary integrators (e.g. SHAKE), are discussed in detail. In the last part we address the generalization of molecular dynamics to treat interacting systems composed of quantum and classical subsystems.
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页码:150 / 189
页数:40
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