Parallel processing for scanning genomic data-bases

被引:0
|
作者
Lavenier, D [1 ]
Pacherie, JL [1 ]
机构
[1] IRISA, F-35042 Rennes, France
来源
PARALLEL COMPUTING: FUNDAMENTALS, APPLICATIONS AND NEW DIRECTIONS | 1998年 / 12卷
关键词
D O I
暂无
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
The scan of a genomic data-base aims to detect similarities between DNA or protein sequences. This is a time-consuming operation, especially when weak similarities are searched. Speeding up the scan can be managed using various strategies of parallelization. This paper presents two approaches carried on at IRISA: systolic and distributed parallelization.
引用
收藏
页码:81 / 88
页数:4
相关论文
共 50 条
  • [21] THE WORLD OF DATA-BASES
    MAKIN, C
    INSTITUTIONAL INVESTOR, 1984, 18 (10): : 343 - &
  • [22] A SEQUEL FOR DATA-BASES
    MUSGRAVE, B
    DATAMATION, 1981, 27 (03): : 69 - 70
  • [23] INTRODUCTION TO DATA-BASES
    TAMM, BG
    TYUGU, EK
    ENGINEERING CYBERNETICS, 1979, 17 (02): : 35 - 43
  • [24] DATA-BASES AND BANKS
    WASSERMAN, F
    FUTURIBLES, 1979, (25) : 103 - 120
  • [25] TEXT BASES AND ABSTRACT DATA-BASES
    KOLTAI, T
    NAUCHNO-TEKHNICHESKAYA INFORMATSIYA SERIYA 2-INFORMATSIONNYE PROTSESSY I SISTEMY, 1990, (11): : 32 - 32
  • [26] SEARCHING OF CHEMICAL-STRUCTURE DATA-BASES WITH PARALLEL COMPUTER HARDWARE
    RASMUSSEN, EM
    WILLETT, P
    WILSON, T
    MANSON, GA
    WILSON, GA
    ANALYTICA CHIMICA ACTA, 1990, 235 (01) : 77 - 86
  • [27] MEANS FOR MANAGEMENT OF RELATIONAL FUZZY DATA-BASES - WAY TO MERGING OF SYSTEMS OF DATA-BASES AND KNOWLEDGE BASES
    MALYUTA, TA
    PASICHNIK, VV
    STOGNIY, AA
    LECTURE NOTES IN COMPUTER SCIENCE, 1989, 364 : 337 - 346
  • [28] FROM DATA BANKS TO DATA-BASES
    DANCHIN, A
    MEDIGUE, C
    GASCUEL, O
    SOLDANO, H
    HENAUT, A
    RESEARCH IN MICROBIOLOGY, 1991, 142 (7-8) : 913 - 916
  • [29] CANCER DATA-BASES EXPANDING
    REYNOLDS, T
    JOURNAL OF THE NATIONAL CANCER INSTITUTE, 1992, 84 (11) : 839 - 841
  • [30] IMPROVED DATA-BASES AND MORE
    ABATEMARCO, F
    PERSONAL COMPUTING, 1988, 12 (01): : 5 - 5