BIPASS: BioInformatics Pipeline Alternative Splicing Services

被引：3

作者：

Lacroix, Zoe ^{[1
]}

Legendre, Christophe ^{[1
]}

Raschid, Louiqa ^{[2
]}

Snyder, Ben ^{[2
]}

机构：

[1] Arizona State Univ, Sci Data Management Lab, Tempe, AZ 85287 USA

[2] Univ Maryland, Dept Comp Sci, College Pk, MD 20742 USA

来源：

NUCLEIC ACIDS RESEARCH | 2007年 / 35卷

基金：

美国国家科学基金会;

关键词：

D O I：

10.1093/nar/gkm344

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

BioInformatics Pipeline Alternative Splicing Services (BIPASS) offer support to scientists interested in gathering information related to alternative splicing (AS) events. The service BIPAS-SpliceDB provides access to AS information that has been extracted a priori from various public databases and stored in a data warehouse. In contrast, the BIPAS-Align&Splice service allows scientists to submit their own sequences and genome to compute AS analysis results. BIPAS services offer various user-friendly ways to navigate through the results. AS results are organized at different conceptual levels (clusters and sequences), and are displayed in graphs or summarized in tables that can be down-loaded in XML or text format. The two BIPAS services SpliceDB and Align&Splice are available online at http://bip.umiacs.umd.edu:8080/.

引用

页码：W292 / W296

页数：5

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