Pressure and Temperature Effects on the Formation of Aminoacrylate Intermediates of Tyrosine Phenol-lyase Demonstrate Reaction Dynamics

被引:8
|
作者
Phillips, Robert S. [1 ]
Craig, Steven [1 ]
Kovalevsky, Andrey [2 ]
Gerlits, Oksana [3 ]
Weiss, Kevin [2 ]
Iorgu, Andreea I. [4 ]
Heyes, Derren J. [4 ]
Hay, Sam [4 ]
机构
[1] Univ Georgia, Athens, GA 30602 USA
[2] Oak Ridge Natl Lab, Oak Ridge, TN USA
[3] Tennessee Wesleyan Univ, Athens, TN USA
[4] Univ Manchester, Manchester, Lancs, England
基金
美国国家卫生研究院;
关键词
enzyme mechanism; pyridoxal-5 '-phosphate; stopped-flow kinetics; temperature dependence; pressure dependence; heat capacity; compressibility; TRYPTOPHAN SYNTHASE; HEAT-CAPACITY; L-SERINE; ENZYME; MECHANISM; CATALYSIS; SULFHYDRYLASE; ACTIVATION; DEPENDENCE; INSIGHTS;
D O I
10.1021/acscatal.9b03967
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The structures of aminoacrylate intermediates of wild-type, F448A mutant, and perdeuterated tyrosine phenol-lyase (TPL) formed from L-tyrosine, 3-F-L-tyrosine, S-ethyl-L-cysteine, and L-serine, with bound 4-hydroxypyridine, were determined by X-ray crystallography. All the aminoacrylate Schiffs base structures in chain A are identical regardless of the substrate used to form them. 4-Hydroxypyridine is also in an identical location, except for F448A TPL, where it is displaced about 1 angstrom due to the increased size of the active site. In chain B, we have found different complexes depending on the substrate. With wild-type TPL, L-tyrosine gave no density, 3-F-L-tyrosine gave a gem-diamine, and L-serine gave a gem-diamine in chain B. S-Ethyl-L-cysteine formed an aminoacrylate in chain B with both wild-type and F448A TPL, but perdeuterated TPL with S-ethyl-L-cysteine formed a gem-diamine of aminoacrylate. The kinetics of aminoacrylate intermediate formation from L-tyrosine and S-ethyl-L-cysteine were followed by stopped-flow spectrophotometry at temperatures from 281 to 320 K and hydrostatic pressures ranging from 1 bar to 1.5 kbar at 293 K. There are large negative values of Delta S+, Delta C-p+, Delta V+, and Delta beta+ for aminoacrylate intermediate formation for L-tyrosine but not for S-ethyl-L-cysteine. Formation of the aminoacrylate intermediates from L-tyrosine and S-ethyl-L-cysteine shows heavy enzyme deuterium kinetic isotope effects with perdeuterated TPL that are strongly temperature- and pressure-dependent and may be normal or inverse depending on conditions. These results suggest that conformational dynamics as well as vibrational coupling play a key role in the mechanism of the elimination reaction of L-tyrosine catalyzed by TPL.
引用
收藏
页码:1692 / 1703
页数:23
相关论文
共 29 条
  • [1] Aminoacrylate intermediates in the reaction of Citrobacter freundii tyrosine phenol-lyase
    Phillips, Robert S.
    Chen, Hao Yuan
    Faleev, Nicolai G.
    BIOCHEMISTRY, 2006, 45 (31) : 9575 - 9583
  • [2] FORMATION OF TYROSINE PHENOL-LYASE BY BACTERIA
    KUMAGAI, H
    MATSUI, H
    YAMADA, H
    AGRICULTURAL AND BIOLOGICAL CHEMISTRY, 1970, 34 (08): : 1259 - &
  • [3] Effects of cyclodextrin derivatives on the catalytic activity of tyrosine phenol-lyase
    Koralewska, A
    Augustyniak, W
    Temeriusz, A
    Kanska, M
    JOURNAL OF INCLUSION PHENOMENA AND MACROCYCLIC CHEMISTRY, 2004, 49 (1-2) : 193 - 197
  • [4] Effects of Cyclodextrin Derivatives on the Catalytic Activity of Tyrosine Phenol-Lyase
    Anna Koralewska
    Wojciech Augustyniak
    Andrzej Temeriusz
    Marianna Kańska
    Journal of inclusion phenomena and macrocyclic chemistry, 2004, 49 : 193 - 197
  • [5] Carbon isotope effects in the studies of the mechanism of action of tyrosine phenol-lyase
    Augustyniak, Wojciech
    Kanski, Ryszard
    Kanska, Marianna
    NUKLEONIKA, 2006, 51 : S7 - S11
  • [6] THE ACTIVITY AND REACTION SPECIFICITY OF TYROSINE PHENOL-LYASE REGULATED BY MONO-VALENT CATIONS
    DEMIDKINA, TV
    MYAGKIKH, IV
    BIOCHIMIE, 1989, 71 (04) : 565 - 571
  • [7] Insights into the Catalytic Mechanism of Tyrosine Phenol-lyase from X-ray Structures of Quinonoid Intermediates
    Milic, Dalibor
    Demidkina, Tatyana V.
    Faleev, Nicolai G.
    Matkovic-Calogovic, Dubravka
    Antson, Alfred A.
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (43) : 29206 - 29214
  • [8] CHEMOENZYMATIC SYNTHESIS OF RING DIFLUORINATED AND TRIFLUORINATED TYROSINES WITH TYROSINE PHENOL-LYASE - EFFECTS OF FLUORINATION ON THE REACTION-KINETICS AND MECHANISM
    PHILLIPS, PS
    SECUNDO, F
    VONTERSCH, RL
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1995, 210 : 21 - FLUO
  • [9] The mechanism of α-proton isotope exchange in amino acids catalysed by tyrosine phenol-lyase -: What is the role of quinonoid intermediates?
    Faleev, NG
    Demidkina, TV
    Tsvetikova, MA
    Phillips, RS
    Yamskov, IA
    EUROPEAN JOURNAL OF BIOCHEMISTRY, 2004, 271 (22): : 4565 - 4571
  • [10] M379A Mutant Tyrosine Phenol-lyase from Citrobacter freundii Has Altered Conformational Dynamics
    Phillips, Robert S.
    Jones, Benjamin
    Nash, Sarah
    CHEMBIOCHEM, 2022, 23 (13)