Improved sparse decomposition based on a smoothed L0 norm using a Laplacian kernel to select features from fMRI data

被引:13
作者
Zhang, Chuncheng [1 ,2 ,3 ,4 ]
Song, Sutao [5 ]
Wen, Xiaotong [6 ]
Yao, Li [1 ,2 ,3 ,4 ]
Long, Zhiying [1 ,2 ,3 ]
机构
[1] Beijing Normal Univ, State Key Lab Cognit Neurosci & Learning, Beijing 100875, Peoples R China
[2] Beijing Normal Univ, IDG McGovern Inst Brain Res, Beijing 100875, Peoples R China
[3] Beijing Normal Univ, Ctr Collaborat & Innovat Brain & Learning Sci, Beijing 100875, Peoples R China
[4] Beijing Normal Univ, Coll Informat Sci & Technol, Beijing 100875, Peoples R China
[5] Jinan Univ, Sch Educ & Psychol, Jinan 250022, Shandong, Peoples R China
[6] Renmin Univ China, Dept Psychol, Beijing 100872, Peoples R China
基金
中国国家自然科学基金;
关键词
fMRI; Feature selection; Sparse representation; Decoding; REPRESENTATIONS; CLASSIFICATION; REGRESSION; NEURONS; CORTEX; MODEL;
D O I
10.1016/j.jneumeth.2014.12.021
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Background: Feature selection plays an important role in improving the classification accuracy of multivariate classification techniques in the context of fMRI-based decoding due to the "few samples and large features" nature of functional magnetic resonance imaging (fMRI) data. Recently, several sparse representation methods have been applied to the voxel selection of fMRI data. Despite the low computational efficiency of the sparse representation methods, they still displayed promise for applications that select features from fMRI data. New method: In this study, we proposed the Laplacian smoothed L0 norm (LSL0) approach for feature selection of fMRI data. Based on the fast sparse decomposition using smoothed L0 norm (SL0) (Mohimani, 2007), the LSL0 method used the Laplacian function to approximate the L0 norm of sources. Results: Results of the simulated and real fMRI data demonstrated the feasibility and robustness of LSL0 for the sparse source estimation and feature selection. Comparison with existing methods: Simulated results indicated that LSL0 produced more accurate source estimation than SL0 at high noise levels. The classification accuracy using voxels that were selected by LSL0 was higher than that by SL0 in both simulated and real fMRI experiment. Moreover, both LSL0 and SL0 showed higher classification accuracy and required less time than ICA and t-test for the fMRI decoding. Conclusions: LSL0 outperformed SL0 in sparse source estimation at high noise level and in feature selection. Moreover, LSL0 and SL0 showed better performance than ICA and t-test for feature selection. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:15 / 24
页数:10
相关论文
共 38 条
[21]   A Review of Feature Reduction Techniques in Neuroimaging [J].
Mwangi, Benson ;
Tian, Tian Siva ;
Soares, Jair C. .
NEUROINFORMATICS, 2014, 12 (02) :229-244
[22]   Beyond mind-reading: multi-voxel pattern analysis of fMRI data [J].
Norman, Kenneth A. ;
Polyn, Sean M. ;
Detre, Greg J. ;
Haxby, James V. .
TRENDS IN COGNITIVE SCIENCES, 2006, 10 (09) :424-430
[23]   A Sparse and Spatially Constrained Generative Regression Model for fMRI Data Analysis [J].
Oikonomou, Vangelis P. ;
Blekas, Konstantinos ;
Astrakas, Loukas .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2012, 59 (01) :58-67
[24]   Sparse coding of sensory inputs [J].
Olshausen, BA ;
Field, DJ .
CURRENT OPINION IN NEUROBIOLOGY, 2004, 14 (04) :481-487
[25]   Sparse coding with an overcomplete basis set: A strategy employed by V1? [J].
Olshausen, BA ;
Field, DJ .
VISION RESEARCH, 1997, 37 (23) :3311-3325
[26]   Machine learning classifiers and fMRI: A tutorial overview [J].
Pereira, Francisco ;
Mitchell, Tom ;
Botvinick, Matthew .
NEUROIMAGE, 2009, 45 (01) :S199-S209
[27]   Oscillations and sparsening of odor representations in the mushroom body [J].
Perez-Orive, J ;
Mazor, O ;
Turner, GC ;
Cassenaer, S ;
Wilson, RI ;
Laurent, G .
SCIENCE, 2002, 297 (5580) :359-365
[28]   SCoRS-A Method Based on Stability for Feature Selection and Apping in Neuroimaging [J].
Rondina, Jane M. ;
Hahn, Tim ;
de Oliveira, Leticia ;
Marquand, Andre F. ;
Dresler, Thomas ;
Leitner, Thomas ;
Fallgatter, Andreas J. ;
Shawe-Taylor, John ;
Mourao-Miranda, Janaina .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2014, 33 (01) :85-98
[29]   Sparse logistic regression for whole-brain classification of fMRI data [J].
Ryali, Srikanth ;
Supekar, Kaustubh ;
Abrams, Daniel A. ;
Menon, Vinod .
NEUROIMAGE, 2010, 51 (02) :752-764
[30]   A review of feature selection techniques in bioinformatics [J].
Saeys, Yvan ;
Inza, Inaki ;
Larranaga, Pedro .
BIOINFORMATICS, 2007, 23 (19) :2507-2517