A wrapper-based feature selection approach to investigate potential biomarkers for early detection of breast cancer

被引:17
作者
Alnowami, Majdi R. [1 ]
Abolaban, Fouad A. [1 ]
Taha, Eslam [2 ]
机构
[1] King Abdulaziz Univ, Dept Nucl Engn, Fac Engn, POB 80204, Jeddah 21589, Saudi Arabia
[2] King Abdulaziz Univ, Ctr Training & Radiat Prevent, POB 80204, Jeddah 21589, Saudi Arabia
关键词
Breast cancer; Biomarkers; Feature ranking; Classification; LEPTIN; SYSTEM;
D O I
10.1016/j.jrras.2022.01.003
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Breast cancer (BC) biomarkers can radically improve the early detection in patients and, as a result, reduce mortality rate, whether for detecting individuals at increased risk of developing cancer or in the screening process. Finding a successful biomarker for breast cancer would be a fast and low-cost first solution to predicting BC, and it could potentially lead to a decline in the global BC mortality rate. However, biomarker exploration translates into the role of feature ranking and selection in machine learning terminology. This study explores the influence of using a particular biomarker or combinations of different biomarkers as predictors for breast cancer. Three different classification algorithms were integrated with a sequential backward selection model: support vector machine (SVM), random forests (RF), and Decision Trees (DTs). The result shows that the optimal set of biomarkers comprises Glucose, Resistin, homo, BMI, and Age using the SVM model. The sensitivity and specificity were 0.94 and 0.90, respectively and the 95% confidence interval for the AUC was [0.89, 0.98]. The result indicates that Glucose, Resistin, homo, BMI, and Age combined can serve as a crucial BC biomarker in BC screening and detection.
引用
收藏
页码:104 / 110
页数:7
相关论文
共 41 条
  • [1] Aggrawal R., 2020, SN COMPUTER SCI, V1
  • [2] Role of a metastatic suppressor gene KAI1/CD82 in the diagnosis and prognosis of breast cancer
    Al-Khater, Khulood M.
    Almofty, Sarah
    Ravinayagam, Vijaya
    Alrushaid, Noor
    Rehman, Suriya
    [J]. SAUDI JOURNAL OF BIOLOGICAL SCIENCES, 2021, 28 (06) : 3391 - 3398
  • [3] Aslan M.F., 2018, INT J INTELL SYST AP, V6, P289, DOI [10.18201/ijisae.2018648455, DOI 10.18201/IJISAE.2018648455]
  • [4] Evaluation of diagnostic and predictive value of serum adipokines: Leptin, resistin and visfatin in postmenopausal breast cancer
    Assiri, Adel M. A.
    Kamel, Hala F. M.
    [J]. OBESITY RESEARCH & CLINICAL PRACTICE, 2016, 10 (04) : 442 - 453
  • [5] Random forests
    Breiman, L
    [J]. MACHINE LEARNING, 2001, 45 (01) : 5 - 32
  • [6] Carneiro G., 2020, NEW ENGL J MED, V9, P84
  • [7] Unregistered Multiview Mammogram Analysis with Pre-trained Deep Learning Models
    Carneiro, Gustavo
    Nascimento, Jacinto
    Bradley, Andrew P.
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION, PT III, 2015, 9351 : 652 - 660
  • [8] Hyperresistinemia and metabolic dysregulation: a risky crosstalk in obese breast cancer
    Crisostomo, Joana
    Matafome, Paulo
    Santos-Silva, Daniela
    Gomes, Ana L.
    Gomes, Manuel
    Patricio, Miguel
    Letra, Liliana
    Sarmento-Ribeiro, Ana B.
    Santos, Lelita
    Seica, Raquel
    [J]. ENDOCRINE, 2016, 53 (02) : 433 - 442
  • [9] The influence of overweight and insulin resistance on breast cancer risk and tumour stage at diagnosis: a prospective study
    Cust, Anne E.
    Stocks, Tanja
    Lukanova, Annekatrin
    Lundin, Eva
    Hallmans, Goran
    Kaaks, Rudolf
    Jonsson, Hayenkan
    Stattin, Par
    [J]. BREAST CANCER RESEARCH AND TREATMENT, 2009, 113 (03) : 567 - 576
  • [10] BREAST CANCER DETECTION USING RSFS-BASED FEATURE SELECTION ALGORITHMS IN THERMAL IMAGES
    Darabi, Nazila
    Rezai, Abdalhossein
    Hamidpour, Seyedeh Shahrbanoo Falahieh
    [J]. BIOMEDICAL ENGINEERING-APPLICATIONS BASIS COMMUNICATIONS, 2021, 33 (03):