DNA barcoding of Thais species (Family: Muricidae) from west coast of India

被引:0
|
作者
Kumar, Ravi [1 ]
Jaiswar, A. K. [1 ]
Pavan-Kumar, A. A. [1 ]
Chakraborty, S. K. [1 ]
Jahageerdar, S. [1 ]
Lakra, W. S. [1 ]
机构
[1] Deemed Univ, Cent Inst Fisheries Educ, Bombay 400061, Maharashtra, India
来源
INDIAN JOURNAL OF FISHERIES | 2015年 / 62卷 / 02期
关键词
Cytochrome c oxidase subunit I gene; DNA barcoding; Gastropods; Muricidae; Thais; NEOGASTROPODA; MOLLUSCA; SUBSTITUTION; GASTROPODA; SINGAPORE; DISCOVERY;
D O I
暂无
中图分类号
S9 [水产、渔业];
学科分类号
0908 ;
摘要
Accurate species identification is essential for defining biological entities for sustainable management and conservation. Species identification under the genus Thais (Mollusca: Neogastropoda: Muricidae) based on shell morphology often mystify due to the phenotype plasticity. In this study, efficiency of DNA barcodes (mitochondrial cytochrome c oxidase subunit I gene - COI gene) was tested to discriminate six species of Thais from west coast of India. The COI gene analysis revealed that the average transitional pairs (S-i = 56) were less than transversional pairs (S-v = 59) with an average ratio of 0.93. The mean intraspecific and interspecific distances were 0.09 +/- 0.011 and 0.19 +/- 0.012, respectively. The average between species distance was 2 times more than within species distance. However, the DNA barcodes were not able to discriminate all the species with high barcode gap. Further, intraspecific distance values were estimated by including reported sequences from other geographical locations to test the DNA barcode efficiency in delineating conspecific individuals across different geographical locations.
引用
收藏
页码:92 / 97
页数:6
相关论文
共 50 条
  • [21] DNA barcoding reflects the diversity and variety of brooding traits of fish species in the family Syngnathidae along China's coast
    Zhang, Yan-Hong
    Qin, Geng
    Zhang, Hui-Xian
    Wang, Xin
    Lin, Qiang
    FISHERIES RESEARCH, 2017, 185 : 137 - 144
  • [22] Description of a new species of Thais (Mollusca: Neogastropoda: Muricidae) from Taiwan, based on morphological and allozyme analyses.
    Tan, KS
    Liu, LL
    ZOOLOGICAL SCIENCE, 2001, 18 (09) : 1275 - 1289
  • [23] DNA barcoding and elucidation of cryptic aphid species (Hemiptera: Aphididae) in India
    Rebijith, K. B.
    Asokan, R.
    Kumar, N. K. Krishna
    Krishna, V.
    Chaitanya, B. N.
    Ramamurthy, V. V.
    BULLETIN OF ENTOMOLOGICAL RESEARCH, 2013, 103 (05) : 601 - 610
  • [24] DNA barcoding of marine ornamental fishes from India
    Bamaniya, Dhaval C.
    Pavan-Kumar, A.
    Gireesh-Babu, P.
    Sharma, Niti
    Reang, Dhalongsaih
    Krishna, Gopal
    Lakra, W. S.
    MITOCHONDRIAL DNA PART A, 2016, 27 (05) : 3093 - 3097
  • [25] DNA and Mini-DNA barcoding for the identification of Porgies species (family Sparidae) of commercial interest on the international market
    Armani, Andrea
    Guardone, Lisa
    Castigliego, Lorenzo
    D'Amico, Priscilla
    Messina, Antonino
    Malandra, Renato
    Gianfaldoni, Daniela
    Guidi, Alessandra
    FOOD CONTROL, 2015, 50 : 589 - 596
  • [26] DNA Barcoding Medicinal Plant Species from Indonesia
    Cahyaningsih, Ria
    Compton, Lindsey Jane
    Rahayu, Sri
    Brehm, Joana Magos
    Maxted, Nigel
    PLANTS-BASEL, 2022, 11 (10):
  • [27] DNA barcoding of mayflies (Insecta: Ephemeroptera) from South India
    Selvakumar, Chellappa
    Sivaramakrishnan, Kumbakonam Govindarajaiyer
    Janarthanan, Sundaram
    MITOCHONDRIAL DNA PART B-RESOURCES, 2016, 1 (01): : 651 - 655
  • [28] DNA Barcoding of the Family: Leiognathidae in the Water of Bay of Bengal, Odisha Coast, India Based on 16s rRNA and COI Gene Sequences
    Jaya Kishor Seth
    Tapan Kumar Barik
    Thalassas: An International Journal of Marine Sciences, 2021, 37 : 831 - 840
  • [29] DNA Barcoding of the Family: Leiognathidae in the Water of Bay of Bengal, Odisha Coast, India Based on 16s rRNA and COI Gene Sequences
    Seth, Jaya Kishor
    Barik, Tapan Kumar
    THALASSAS, 2021, 37 (02): : 831 - 840
  • [30] DNA barcoding for identification of marine gastropod species from Hainan island, China
    Ran, Ke
    Li, Qi
    Qi, Lu
    Li, Weidong
    Kong, Lingfeng
    FISHERIES RESEARCH, 2020, 225