Proposed nomenclature for microhaplotypes

被引:47
作者
Kidd, Kenneth K. [1 ]
机构
[1] Yale Univ, Sch Med, Dept Genet, 333 Cedar St, New Haven, CT 06520 USA
基金
美国国家科学基金会;
关键词
ALLELE;
D O I
10.1186/s40246-016-0078-y
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Microhaplotypes are a new type of genetic marker in forensics and population genetics. A standardized nomenclature is desirable. A simple approach that does not require a central authority for approval is proposed. The nomenclature proposed follows the recommendation of the HUGO Gene Nomenclature Committee (http://www.genenames.org): "We strongly encourage naming families and groups of genes related by sequence and/or function using a "root" symbol. This is an efficient and informative way to name related genes, and already works well for a number of established gene families..." The proposal involves a simple root consisting of "mh" followed by the two-digit chromosome number and unique characters established by the authors in the initial publication. We suggest the unique symbol be an indication of the laboratory followed by characters unique to the chromosome and laboratory. For instance, the microhaplotype symbol mh01KK-001 refers to a locus on chromosome 1 published by the Kidd Lab (KK-) as their #001. Publication defines mh01KK-001 as comprised of four single nucleotide polymorphisms (SNPs), rs4648344, rs6663840, rs58111155, and rs6688969.
引用
收藏
页数:4
相关论文
共 10 条
  • [1] Approaches for identifying multiple-SNP haplotype blocks for use in human identification
    Hiroaki, Nakahara
    Koji, Fujii
    Tetsushi, Kitayama
    Kazumasa, Sekiguchi
    Hiroaki, Nakanishi
    Kazuyuki, Saito
    [J]. LEGAL MEDICINE, 2015, 17 (05) : 415 - 420
  • [2] KIDD K K, 1988, Cytogenetics and Cell Genetics, V49, P132, DOI 10.1159/000132664
  • [3] Microhaplotype loci are a powerful new type of forensic marker
    Kidd, K. K.
    Pakstis, A. J.
    Speed, W. C.
    Lagace, R.
    Chang, J.
    Wootton, S.
    Ihuegbu, N.
    [J]. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES, 2013, 4 (01) : E123 - E124
  • [4] Genetic markers for massively parallel sequencing in forensics
    Kidd, Kenneth K.
    Speed, William C.
    Wootton, Sharon
    Lagace, Robert
    Langit, Reina
    Haigh, Eva
    Chang, Joseph
    Pakstis, Andrew J.
    [J]. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES, 2015, 5 : E677 - E679
  • [5] Criteria for selecting microhaplotypes: mixture detection and deconvolution
    Kidd, Kenneth K.
    Speed, William C.
    [J]. INVESTIGATIVE GENETICS, 2015, 6
  • [6] Current sequencing technology makes microhaplotypes a powerful new type of genetic marker for forensics
    Kidd, Kenneth K.
    Pakstis, Andrew J.
    Speed, William C.
    Lagace, Robert
    Chang, Joseph
    Wootton, Sharon
    Haigh, Eva
    Kidd, Judith R.
    [J]. FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2014, 12 : 215 - 224
  • [7] Global patterns of variation in allele and haplotype frequencies and linkage disequilibrium across the CYP2E1 gene
    Lee, M-Y
    Mukherjee, N.
    Pakstis, A. J.
    Khaliq, S.
    Mohyuddin, A.
    Mehdi, S. Q.
    Speed, W. C.
    Kidd, J. R.
    Kidd, K. K.
    [J]. PHARMACOGENOMICS JOURNAL, 2008, 8 (05) : 349 - 356
  • [8] ALFRED: an allele frequency resource for research and teaching
    Rajeevan, Haseena
    Soundararajan, Usha
    Kidd, Judith R.
    Pakstis, Andrew J.
    Kidd, Kenneth K.
    [J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) : D1010 - D1015
  • [9] Global variation in CYP2C8-CYP2C9 functional haplotypes
    Speed, William C.
    Kang, Soonmo Peter
    Tuck, David P.
    Harris, Lyndsay N.
    Kidd, Kenneth K.
    [J]. PHARMACOGENOMICS JOURNAL, 2009, 9 (04) : 283 - 290
  • [10] NGS technology makes microhaplotype a potential forensic marker
    Wang, Hui
    Zhu, Jing
    Zhou, Nan
    Jiang, Youjing
    Wang, Li
    He, Wang
    Peng, Duo
    Su, Qin
    Mao, Jiong
    Chan, Dan
    Liang, Weibo
    Zhang, Lin
    [J]. FORENSIC SCIENCE INTERNATIONAL GENETICS SUPPLEMENT SERIES, 2015, 5 : E233 - E234