Learning molecular potentials with neural networks

被引:38
作者
Gokcan, Hatice [1 ]
Isayev, Olexandr [1 ]
机构
[1] Carnegie Mellon Univ, Dept Chem, Mellon Coll Sci, 4400 5th Ave, Pittsburgh, PA 15213 USA
基金
美国国家科学基金会;
关键词
deep learning; machine learning; molecular potential; neural networks; potential energy surface; PROTEIN-LIGAND BINDING; COUPLED-CLUSTER THEORY; FORCE-FIELD; CHEMICAL UNIVERSE; ENERGY SURFACES; DYNAMICS SIMULATIONS; ACCURATE; DATABASE; MODEL; PERFORMANCE;
D O I
10.1002/wcms.1564
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The potential energy of molecular species and their conformers can be computed with a wide range of computational chemistry methods, from molecular mechanics to ab initio quantum chemistry. However, the proper choice of the computational approach based on computational cost and reliability of calculated energies is a dilemma, especially for large molecules. This dilemma is proved to be even more problematic for studies that require hundreds and thousands of calculations, such as drug discovery. On the other hand, driven by their pattern recognition capabilities, neural networks started to gain popularity in the computational chemistry community. During the last decade, many neural network potentials have been developed to predict a variety of chemical information of different systems. Neural network potentials are proved to predict chemical properties with accuracy comparable to quantum mechanical approaches but with the cost approaching molecular mechanics calculations. As a result, the development of more reliable, transferable, and extensible neural network potentials became an attractive field of study for researchers. In this review, we outlined an overview of the status of current neural network potentials and strategies to improve their accuracy. We provide recent examples of studies that prove the applicability of these potentials. We also discuss the capabilities and shortcomings of the current models and the challenges and future aspects of their development and applications. It is expected that this review would provide guidance for the development of neural network potentials and the exploitation of their applicability. This article is categorized under: Data Science > Artificial Intelligence/Machine Learning Molecular and Statistical Mechanics > Molecular Interactions Software > Molecular Modeling
引用
收藏
页数:22
相关论文
共 153 条
[1]   An implementation of artificial neural-network potentials for atomistic materials simulations: Performance for TiO2 [J].
Artrith, Nongnuch ;
Urban, Alexander .
COMPUTATIONAL MATERIALS SCIENCE, 2016, 114 :135-150
[2]   High-dimensional neural network potentials for metal surfaces: A prototype study for copper [J].
Artrith, Nongnuch ;
Behler, Joerg .
PHYSICAL REVIEW B, 2012, 85 (04)
[3]  
Axelrod S, 2020, GEOM ENERGY ANNOTATE
[4]  
Bader F. W., 1994, ATOMS MOL QUANTUM TH
[5]   Hybrid models for combined quantum mechanical and molecular mechanical approaches [J].
Bakowies, D ;
Thiel, W .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (25) :10580-10594
[6]   The MolSSI Driver Interface Project: A framework for standardized, on-the-fly interoperability between computational molecular sciences codes [J].
Barnes, Taylor A. ;
Marin-Rimoldi, Eliseo ;
Ellis, Samuel ;
Crawford, T. Daniel .
COMPUTER PHYSICS COMMUNICATIONS, 2021, 261
[7]   Coupled-cluster theory in quantum chemistry [J].
Bartlett, Rodney J. ;
Musial, Monika .
REVIEWS OF MODERN PHYSICS, 2007, 79 (01) :291-352
[8]   Machine learning unifies the modeling of materials and molecules [J].
Bartok, Albert P. ;
De, Sandip ;
Poelking, Carl ;
Bernstein, Noam ;
Kermode, James R. ;
Csanyi, Gabor ;
Ceriotti, Michele .
SCIENCE ADVANCES, 2017, 3 (12)
[9]   On representing chemical environments [J].
Bartok, Albert P. ;
Kondor, Risi ;
Csanyi, Gabor .
PHYSICAL REVIEW B, 2013, 87 (18)
[10]   Gaussian Approximation Potentials: The Accuracy of Quantum Mechanics, without the Electrons [J].
Bartok, Albert P. ;
Payne, Mike C. ;
Kondor, Risi ;
Csanyi, Gabor .
PHYSICAL REVIEW LETTERS, 2010, 104 (13)