Complete Genome Sequence ofCandida theaefrom Hickman Line Infection in an Immunocompromised Child

被引：5
作者：
Chew, Ka Lip [1 ]
Octavia, Sophie [2 ]
Teo, Jeanette W. P. [1 ]
机构：
[1] Natl Univ Singapore Hosp, Dept Lab Med, Singapore, Singapore
[2] Natl Ctr Infect Dis, Natl Publ Hlth Lab, Singapore, Singapore
来源：
MYCOPATHOLOGIA | 2020年 / 185卷 / 04期
关键词：
Whole-genome-sequencing; Candida theae; Antifungal susceptibility; 5-Flucytosine resistance; Antimicrobial resistance;
D O I：
10.1007/s11046-020-00476-3
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
We present the first whole-genome-sequencing data of a rare fungal species,Candida theaeisolated in the context of a Hickman line infection in a patient with juvenile myelomonocytic leukaemia. To our knowledge, this is the first instance of publicly available genomic data for this species. Loci associated with antifungal resistance were referenced against its closely related members of theCandida parapsilosiscomplex.
引用
收藏
页码：727 / 729
页数：3
相关论文
共 12 条
  • [1] [Anonymous], 1990, PCR Protocols: A Guide to Methods and Applications
  • [2] Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage
    Chakraborty, Mahul
    Baldwin-Brown, James G.
    Long, Anthony D.
    Emerson, J. J.
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (19)
  • [3] Candida theae sp nov., a new anamorphic beverage-associated member of the Lodderomyces clade
    Chang, Chin-Feng
    Lin, Yu-Ching
    Chen, Shan-Fu
    Carvaja Barriga, Enrique Javier
    Portero Barahona, Patricia
    James, Stephen A.
    Bond, Christopher J.
    Roberts, Ian N.
    Lee, Ching-Fu
    [J]. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 2012, 153 (1-2) : 10 - 14
  • [4] Mutational Analysis of Flucytosine Resistance in Candida glabrata
    Edlind, Thomas D.
    Katiyar, Santosh K.
    [J]. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2010, 54 (11) : 4733 - 4738
  • [5] Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
    Koren, Sergey
    Walenz, Brian P.
    Berlin, Konstantin
    Miller, Jason R.
    Bergman, Nicholas H.
    Phillippy, Adam M.
    [J]. GENOME RESEARCH, 2017, 27 (05) : 722 - 736
  • [6] MycopathologiaGENOMES: The New 'Home' for the Publication of Fungal Genomes
    Mac Aogain, Micheal
    Chaturvedi, Vishnu
    Chotirmall, Sanjay H.
    [J]. MYCOPATHOLOGIA, 2019, 184 (05) : 551 - 554
  • [7] Implication of Candida parapsilosis FKS1 and FKS2 Mutations in Reduced Echinocandin Susceptibility
    Marti-Carrizosa, M.
    Sanchez-Reus, F.
    March, F.
    Canton, E.
    Coll, P.
    [J]. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2015, 59 (06) : 3570 - 3573
  • [8] Versatile genome assembly evaluation with QUAST-LG
    Mikheenko, Alla
    Prjibelski, Andrey
    Saveliev, Vladislav
    Antipov, Dmitry
    Gurevich, Alexey
    [J]. BIOINFORMATICS, 2018, 34 (13) : 142 - 150
  • [9] JS']JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
    Richter, Michael
    Rossello-Mora, Ramon
    Gloeckner, Frank Oliver
    Peplies, Joerg
    [J]. BIOINFORMATICS, 2016, 32 (06) : 929 - 931
  • [10] The European Committee on Antimicrobial Susceptibility Testing, 2020, BREAKP TABL INT MICS
12