The Role of Atomic Polarization in the Thermodynamics of Chloroform Partitioning to Lipid Bilayers

被引:44
作者
Vorobyov, Igor [2 ]
Bennett, W. F. Drew [1 ]
Tieleman, D. Peter [1 ,3 ]
Allen, Toby W. [2 ,4 ,5 ]
Noskov, Sergei [1 ,3 ]
机构
[1] Univ Calgary, Dept Biol Sci, Calgary, AB T2N 2N4, Canada
[2] Univ Calif Davis, Dept Chem, Davis, CA 95616 USA
[3] RMIT Univ, Inst Biocomplex & Informat IBI, Melbourne, Vic 3001, Australia
[4] RMIT Univ, Hlth Innovat Res Inst, Melbourne, Vic 3001, Australia
[5] RMIT Univ, Sch Appl Sci, Melbourne, Vic 3001, Australia
基金
加拿大自然科学与工程研究理事会; 美国国家科学基金会;
关键词
MEYER-OVERTON HYPOTHESIS; CLASSICAL DRUDE OSCILLATOR; COARSE-GRAINED MODEL; ARGININE SIDE-CHAIN; GATED ION-CHANNEL; MOLECULAR-DYNAMICS; FORCE-FIELD; FREE-ENERGY; PHOSPHOLIPID-BILAYERS; GENERAL-ANESTHETICS;
D O I
10.1021/ct200417p
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In spite of extensive research and use in medical practice, the precise molecular mechanism of volatile anesthetic action remains unknown. The distribution of anesthetics within lipid bilayers and potential targeting to membrane proteins is thought to be central to therapeutic function. Therefore, obtaining a molecular level understanding of volatile anesthetic partitioning into lipid bilayers is of vital importance to modern pharmacology. In this study we investigate the partitioning of the prototypical anesthetic, chloroform, into lipid bilayers and different organic solvents using molecular dynamics simulations with potential models ranging from simplified coarse-grained MARTINI to additive and polarizable CHARMM all-atom force fields. Many volatile anesthetics display significant inducible dipole moments, which correlate with their potency, yet the exact role of molecular polarizability in their stabilization within lipid bilayers remains unknown. We observe that explicit treatment of atomic polarizability makes it possible to accurately reproduce solvation free energies in solvents with different polarities, allowing for quantitative studies in heterogeneous molecular distributions, such as lipid bilayers. We calculate the free energy profiles for chloroform crossing lipid bilayers to reveal a role of polarizability in modulating chloroform partitioning thermodynamics via the chloroform-induced dipole moment and highlight competitive binding to the membrane core and toward the glycerol backbone that may have significant implications for understanding anesthetic action.
引用
收藏
页码:618 / 628
页数:11
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