Single Cell Genomics for Tumor Heterogeneity

被引:0
作者
Lee, Hae-Ock [1 ]
Park, Woong-Yang [2 ]
机构
[1] Catholic Univ Korea, Dept Microbiol, Coll Med, Seoul, South Korea
[2] Samsung Genome Inst, Samsung Med Ctr, Seoul, South Korea
来源
TRANSLATIONAL RESEARCH IN BREAST CANCER | 2021年 / 1187卷
关键词
Single cell genomics; Tumor heterogeneity; Breast cancer; Tumor evolution; Treatment resistance; INFILTRATING LYMPHOCYTES; HER2-TARGETED THERAPIES; IMMUNE CELLS; RNA-SEQ; MUTATIONS; TRANSCRIPTOME; TISSUE; RESISTANCE; HIGHLIGHTS; INFERENCE;
D O I
10.1007/978-981-32-9620-6_10
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Single cell genomics became a universal and powerful tool to study cellular diversity at genomic levels in normal and disease conditions. Cancer is a disease of genomic instability which instigates clonal evolution and intra-tumoral heterogeneity. Cancer progression also accompanies gross alterations in the microenvironment, and the stromal or immune cell types comprising the tumor microenvironment can be explored by single cell genomics. So far, breast cancer has been analyzed by single cell genomic tools for the clonal evolution, inter- and intratumoral heterogeneity in molecular signatures, and tumor microenvironment. We will briefly go over those studies and discuss the potential application of single cell genomics for the diagnostics and management of cancer.
引用
收藏
页码:205 / 214
页数:10
相关论文
共 63 条
[1]   Clinical Applications of Circulating Tumor Cells and Circulating Tumor DNA as Liquid Biopsy [J].
Alix-Panabieres, Catherine ;
Pantel, Klaus .
CANCER DISCOVERY, 2016, 6 (05) :479-491
[2]   Tumor cells circulate in the peripheral blood of all major carcinomas but not in healthy subjects or patients with nonmalignant diseases [J].
Allard, WJ ;
Matera, J ;
Miller, MC ;
Repollet, M ;
Connelly, MC ;
Rao, C ;
Tibbe, AGJ ;
Uhr, JW ;
Terstappen, LWMM .
CLINICAL CANCER RESEARCH, 2004, 10 (20) :6897-6904
[3]   Multiplexed ion beam imaging of human breast tumors [J].
Angelo, Michael ;
Bendall, Sean C. ;
Finck, Rachel ;
Hale, Matthew B. ;
Hitzman, Chuck ;
Borowsky, Alexander D. ;
Levenson, Richard M. ;
Lowe, John B. ;
Liu, Scot D. ;
Zhao, Shuchun ;
Natkunam, Yasodha ;
Nolan, Garry P. .
NATURE MEDICINE, 2014, 20 (04) :436-+
[4]   Mutational studies on single circulating tumor cells isolated from the blood of inflammatory breast cancer patients [J].
Bingham, Catherine ;
Fernandez, Sandra V. ;
Fittipaldi, Patricia ;
Dempsey, Paul W. ;
Ruth, Karen J. ;
Cristofanilli, Massimo ;
Alpaugh, R. Katherine .
BREAST CANCER RESEARCH AND TREATMENT, 2017, 163 (02) :219-230
[5]   Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer [J].
Chung, Woosung ;
Eum, Hye Hyeon ;
Lee, Hae-Ock ;
Lee, Kyung-Min ;
Lee, Han-Byoel ;
Kim, Kyu-Tae ;
Ryu, Han Suk ;
Kim, Sangmin ;
Lee, Jeong Eon ;
Park, Yeon Hee ;
Kan, Zhengyan ;
Han, Wonshik ;
Park, Woong-Yang .
NATURE COMMUNICATIONS, 2017, 8
[6]   Circulating tumor cells: A novel prognostic factor for newly diagnosed metastatic breast cancer [J].
Cristofanilli, M ;
Hayes, DF ;
Budd, GT ;
Ellis, MJ ;
Stopeck, A ;
Reuben, JM ;
Doyle, GV ;
Matera, J ;
Allard, WJ ;
Miller, MC ;
Fritsche, HA ;
Hortobagyi, GN ;
Terstappen, LWMM .
JOURNAL OF CLINICAL ONCOLOGY, 2005, 23 (07) :1420-1430
[7]   Circulating tumor cells, disease progression, and survival in metastatic breast cancer [J].
Cristofanilli, M ;
Budd, GT ;
Ellis, MJ ;
Stopeck, A ;
Matera, J ;
Miller, MC ;
Reuben, JM ;
Doyle, GV ;
Allard, WJ ;
Terstappen, LWMM ;
Hayes, DF .
NEW ENGLAND JOURNAL OF MEDICINE, 2004, 351 (08) :781-791
[8]   Integrated genome and transcriptome sequencing of the same cell [J].
Dey, Siddharth S. ;
Kester, Lennart ;
Spanjaard, Bastiaan ;
Bienko, Magda ;
van Oudenaarden, Alexander .
NATURE BIOTECHNOLOGY, 2015, 33 (03) :285-+
[9]   Cancer-associated fibroblasts modulate growth factor signaling and extracellular matrix remodeling to regulate tumor metastasis [J].
Erdogan, Begum ;
Webb, Donna J. .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2017, 45 :229-236
[10]   Innate and adaptive immune cells in the tumor microenvironment [J].
Gajewski, Thomas F. ;
Schreiber, Hans ;
Fu, Yang-Xin .
NATURE IMMUNOLOGY, 2013, 14 (10) :1014-1022