A new amide proton R1ρ experiment permits accurate characterization of microsecond time-scale conformational exchange

被引:37
作者
Eichmüller, C [1 ]
Skrynnikov, NR [1 ]
机构
[1] Purdue Univ, Dept Chem, W Lafayette, IN 47907 USA
关键词
cardiac troponin C; chemical exchange; deuteration; mu s-ms protein dynamics; off-resonance spin lock; proton relaxation; relaxation dispersion;
D O I
10.1007/s10858-005-0658-y
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A new off-resonance spin-lock experiment to record relaxation dispersion profiles of amide protons is presented. The sensitivity-enhanced HSQC-type sequence is designed to minimize the interference from cross-relaxation effects and ensure that the dispersion profiles in the absence of mu s-ms time-scale dynamics are. at. Toward this end (i) the proton background is eliminated by sample deuteration (Ishima et al., 1998), (ii) H-1 spin lock is applied to two-spin modes 2(H-x sin theta + H-z cos theta)N-z, and (iii) the tilt angle theta approximate to 35 degrees is maintained throughout the series of measurements (Desvaux et al., 1995). The relaxation dispersion profiles recorded in this manner sample a wide range of effective rf field strengths ( up to and in excess of 20 kHz) which makes them particularly suitable for studies of motions on the time scale <= 100 mu s. The new experiment has been tested on the Ca2+- loaded regulatory domain of cardiac troponin C. Many residues show pronounced dispersions with remarkably similar correlation times of similar to 30 mu s. Furthermore, these residues are localized in the regions that have been previously implicated in conformational changes (Spyracopoulos et al., 1997).
引用
收藏
页码:281 / 293
页数:13
相关论文
共 67 条
[1]   Regulatory domain conformational exchange and linker region flexibility in cardiac troponin C bound to cardiac troponin I [J].
Abbott, MB ;
Gaponenko, V ;
Abusamhadneh, E ;
Finley, N ;
Li, G ;
Dvoretsky, A ;
Rance, M ;
Solaro, RJ ;
Rosevear, PR .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (27) :20610-20617
[2]   Monitoring macromolecular motions on microsecond to millisecond time scales by R(1)rho-R(1) constant relaxation time NMR spectroscopy [J].
Akke, M ;
Palmer, AG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (04) :911-912
[3]  
ASAKURA T, 1995, J BIOMOL NMR, V6, P227, DOI 10.1007/BF00197804
[4]  
BRUSCHWEILER R, 1989, J AM CHEM SOC, V111, P8034
[5]   Multiple time scale backbone dynamics of homologous thermophilic and mesophilic ribonuclease HI enzymes [J].
Butterwick, JA ;
Loria, JP ;
Astrof, NS ;
Kroenke, CD ;
Cole, R ;
Rance, M ;
Palmer, AG .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 339 (04) :855-871
[6]   SUPPRESSION OF CROSS-RELAXATION EFFECTS IN TOCSY SPECTRA VIA A MODIFIED DIPSI-2 MIXING SEQUENCE [J].
CAVANAGH, J ;
RANCE, M .
JOURNAL OF MAGNETIC RESONANCE, 1992, 96 (03) :670-678
[7]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293
[8]   Simple solution to decrease angular dispersion in off-resonance experiments [J].
Desvaux, H ;
Goldman, M .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1996, 110 (02) :198-201
[9]   STUDY OF SLOW MOLECULAR MOTIONS IN SOLUTION USING OFF-RESONANCE IRRADIATION IN HOMONUCLEAR NMR .2. FAST CHEMICAL-EXCHANGE PROCESSES [J].
DESVAUX, H ;
BIRLIRAKIS, N ;
WARY, C ;
BERTHAULT, P .
MOLECULAR PHYSICS, 1995, 86 (05) :1059-1073
[10]   A NEW NMR METHOD FOR MEASURING THE ROTATIONAL CORRELATION TIME OF MOLECULES IN THE LIQUID-STATE [J].
DESVAUX, H ;
GOLDMAN, M .
MOLECULAR PHYSICS, 1994, 81 (04) :955-974