Hydration-dependent dynamical transition in protein:: Protein interactions at ≈240 k

被引:15
|
作者
Kurkal-Siebert, Vandana [1 ,3 ]
Agarwal, Ritesh [1 ]
Smith, Jeremy C. [1 ,2 ,4 ]
机构
[1] Univ Heidelberg, Interdisciplinary Ctr Sci Comp IWR, D-69120 Heidelberg, Germany
[2] Oak Ridge Natl Lab, Ctr Biophys Mol, Oak Ridge, TN 37831 USA
[3] BASF SE, Mol Modelling GKP M, D-67056 Ludwigshafen, Germany
[4] Univ Tennessee, Dept Biochem Cellular & Mol Biol, Knoxville, TN 37996 USA
关键词
D O I
10.1103/PhysRevLett.100.138102
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Interprotein motions in low and fully hydrated carboxymyoglobin crystals are investigated using molecular dynamics simulation. Below approximate to 240 K, the calculated dynamic structure factor exhibits a peak arising from interprotein vibration. Above approximate to 240 K, the intermolecular fluctuations of the fully hydrated crystal increase drastically, whereas the low-hydration model exhibits no transition. Autocorrelation function analysis shows the transition to be dominated by the activation of diffusive intermolecular motion. The potential of mean force for the interaction remains quasiharmonic. The results indicate useful experimental avenues on protein:protein interactions to be explored using next-generation neutron sources.
引用
收藏
页数:4
相关论文
共 50 条
  • [41] Effects of hydration and interactions with chemical chaperones on protein dynamics
    不详
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2005, 34 (06): : 615 - 615
  • [42] Characterizing protein hydration to inform its interactions and assemblies
    Patel, Amish
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 254
  • [43] SPECTROSCOPIC PROBES OF PROTEIN HYDRATION AND GLASS-TRANSITION
    SHAH, NK
    LUDESCHER, RD
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1994, 208 : 1 - AGFD
  • [44] Light-scattering studies of protein solutions: Role of hydration in weak protein-protein interactions
    Paliwal, A
    Asthagiri, D
    Abras, D
    Lenhoff, AM
    Paulaitis, ME
    BIOPHYSICAL JOURNAL, 2005, 89 (03) : 1564 - 1573
  • [45] IMPACT OF DYNAMICAL HYDRATION SHELL AROUND HA PROTEIN ON NONLINEAR CONCENTRATION DEPENDENT T-RAYS ABSORPTION
    Sun, Yiwen
    Wang, Tianfu
    Chen, Siping
    Zuo, Jian
    Zhang, Zhenwei
    Zhang, Cunlin
    JOURNAL OF INNOVATIVE OPTICAL HEALTH SCIENCES, 2013, 6 (04)
  • [46] Helix-coil transition in protein-protein interactions
    Wafer, Lucas
    McCallum, Scott
    Makhatadze, George
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 243
  • [47] Water-Protein Interactions Coupled with Protein Conformational Transition
    Kitazawa, Soichiro
    Aoshima, Yu
    Wakamoto, Takuro
    Kitahara, Ryo
    BIOPHYSICAL JOURNAL, 2018, 115 (06) : 981 - 987
  • [48] Role of protein-water hydrogen bond dynamics in the protein dynamical transition
    Tarek, M
    Tobias, DJ
    PHYSICAL REVIEW LETTERS, 2002, 88 (13) : 4
  • [50] Water Dynamics in Protein Hydration Shells: The Molecular Origins of the Dynamical Perturbation
    Fogarty, Aoife C.
    Laage, Damien
    JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (28): : 7715 - 7729