Hydration-dependent dynamical transition in protein:: Protein interactions at ≈240 k

被引:15
|
作者
Kurkal-Siebert, Vandana [1 ,3 ]
Agarwal, Ritesh [1 ]
Smith, Jeremy C. [1 ,2 ,4 ]
机构
[1] Univ Heidelberg, Interdisciplinary Ctr Sci Comp IWR, D-69120 Heidelberg, Germany
[2] Oak Ridge Natl Lab, Ctr Biophys Mol, Oak Ridge, TN 37831 USA
[3] BASF SE, Mol Modelling GKP M, D-67056 Ludwigshafen, Germany
[4] Univ Tennessee, Dept Biochem Cellular & Mol Biol, Knoxville, TN 37996 USA
关键词
D O I
10.1103/PhysRevLett.100.138102
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Interprotein motions in low and fully hydrated carboxymyoglobin crystals are investigated using molecular dynamics simulation. Below approximate to 240 K, the calculated dynamic structure factor exhibits a peak arising from interprotein vibration. Above approximate to 240 K, the intermolecular fluctuations of the fully hydrated crystal increase drastically, whereas the low-hydration model exhibits no transition. Autocorrelation function analysis shows the transition to be dominated by the activation of diffusive intermolecular motion. The potential of mean force for the interaction remains quasiharmonic. The results indicate useful experimental avenues on protein:protein interactions to be explored using next-generation neutron sources.
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页数:4
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