Hydration-dependent dynamical transition in protein:: Protein interactions at ≈240 k

被引:15
|
作者
Kurkal-Siebert, Vandana [1 ,3 ]
Agarwal, Ritesh [1 ]
Smith, Jeremy C. [1 ,2 ,4 ]
机构
[1] Univ Heidelberg, Interdisciplinary Ctr Sci Comp IWR, D-69120 Heidelberg, Germany
[2] Oak Ridge Natl Lab, Ctr Biophys Mol, Oak Ridge, TN 37831 USA
[3] BASF SE, Mol Modelling GKP M, D-67056 Ludwigshafen, Germany
[4] Univ Tennessee, Dept Biochem Cellular & Mol Biol, Knoxville, TN 37996 USA
关键词
D O I
10.1103/PhysRevLett.100.138102
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Interprotein motions in low and fully hydrated carboxymyoglobin crystals are investigated using molecular dynamics simulation. Below approximate to 240 K, the calculated dynamic structure factor exhibits a peak arising from interprotein vibration. Above approximate to 240 K, the intermolecular fluctuations of the fully hydrated crystal increase drastically, whereas the low-hydration model exhibits no transition. Autocorrelation function analysis shows the transition to be dominated by the activation of diffusive intermolecular motion. The potential of mean force for the interaction remains quasiharmonic. The results indicate useful experimental avenues on protein:protein interactions to be explored using next-generation neutron sources.
引用
收藏
页数:4
相关论文
共 50 条
  • [1] Hydration-dependent dynamic crossover phenomenon in protein hydration water
    Wang, Zhe
    Fratini, Emiliano
    Li, Mingda
    Le, Peisi
    Mamontov, Eugene
    Baglioni, Piero
    Chen, Sow-Hsin
    PHYSICAL REVIEW E, 2014, 90 (04):
  • [2] Protein Surface and Core Dynamics Show Concerted Hydration-Dependent Activation
    Wood, Kathleen
    Gallat, Francois-Xavier
    Otten, Renee
    van Heel, Auke J.
    Lethier, Mathilde
    van Eijck, Lambert
    Moulin, Martine
    Haertlein, Michael
    Weik, Martin
    Mulder, Frans A. A.
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2013, 52 (02) : 665 - 668
  • [3] Dynamical Transition of Protein-Hydration Water
    Doster, W.
    Busch, S.
    Gaspar, A. M.
    Appavou, M. -S.
    Wuttke, J.
    Scheer, H.
    PHYSICAL REVIEW LETTERS, 2010, 104 (09)
  • [4] Hydration-dependent protein dynamics revealed by molecular dynamics simulation of crystalline staphylococcal nuclease
    Joti, Yasumasa
    Nakagawa, Hiroshi
    Kataoka, Mikio
    Kitao, Akio
    JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (11): : 3522 - 3528
  • [5] Protein dynamical transition at 110 K
    Kim, Chae Un
    Tate, Mark W.
    Gruner, Sol M.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (52) : 20897 - 20901
  • [6] Is the protein dynamical transition dependent on tertiary structure?
    He, Yunfen
    Knab, Joseph
    Chen, Jing-Yin
    Markelz, Andrea
    BIOPHYSICAL JOURNAL, 2007, : 405A - 405A
  • [7] HYDRATION-DEPENDENT ENTHALPY CHANGES IN HELIX-COIL TRANSITION IN TENDON
    DELISI, C
    SHAMOS, MH
    JOURNAL OF POLYMER SCIENCE PART A-2-POLYMER PHYSICS, 1972, 10 (04) : 673 - &
  • [8] A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation
    Dorone, Yanniv
    Boeynaems, Steven
    Flores, Eduardo
    Jin, Benjamin
    Hateley, Shannon
    Bossi, Flavia
    Lazarus, Elena
    Pennington, Janice G.
    Michiels, Emiel
    De Decker, Mathias
    Vints, Katlijn
    Baatsen, Pieter
    Bassel, George W.
    Otegui, Marisa S.
    Holehouse, Alex S.
    Exposito-Alonso, Moises
    Sukenik, Shahar
    Gitler, Aaron D.
    Rhee, Seung Y.
    CELL, 2021, 184 (16) : 4284 - +
  • [9] Communication: Protein dynamical transition vs. liquid-liquid phase transition in protein hydration water
    Schiro, Giorgio
    Fomina, Margarita
    Cupane, Antonio
    JOURNAL OF CHEMICAL PHYSICS, 2013, 139 (12):
  • [10] Electrostatic, elastic and hydration-dependent interactions in dermis influencing volume exclusion and macromolecular transport
    Oien, Alf H.
    Wiig, Helge
    JOURNAL OF THEORETICAL BIOLOGY, 2016, 400 : 80 - 91