Microsecond Timescale Protein Dynamics: a Combined Solid-State NMR Approach

被引:32
作者
Rovo, Petra [1 ,2 ]
Linser, Rasmus [1 ,2 ]
机构
[1] Ludwig Maximailians Univ Munchen, Dept Chem & Pharm, D-81377 Munich, Germany
[2] Ctr Integrated Prot Sci CiPSM, Butenandtstr 5, D-81377 Munich, Germany
关键词
exchange parameters; protein dynamics; proton detection; relaxation dispersion; solid-state NMR; RELAXATION-DISPERSION NMR; ATOMIC-RESOLUTION DYNAMICS; CHEMICAL-EXCHANGE; SLOW MOTIONS; TIME-SCALE; SH3; DOMAIN; SPECTROSCOPY; VARIABILITY; FIBRIL; MODEL;
D O I
10.1002/cphc.201701238
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Conformational exchange in proteins is a major determinant in protein functionality. In particular, the s-ms timescale is associated with enzymatic activity and interactions between biological molecules. We show here that a comprehensive data set of R1 relaxation dispersion profiles employing multiple effective fields and tilt angles can be easily obtained in perdeuterated, partly back-exchanged proteins at fast magic-angle spinning and further complemented with chemical-exchange saturation transfer NMR experiments. The approach exploits complementary sources of information and enables the extraction of multiple exchange parameters for s-ms timescale conformational exchange, most notably including the sign of the chemical shift differences between the ground and excited states.
引用
收藏
页码:34 / 39
页数:6
相关论文
共 41 条
[1]  
Barbet-Massin E., 2015, ANGEW CHEM, V127, P4441
[2]   Site-Specific Solid-State NMR Studies of "Trigger Factor" in Complex with the Large Ribosomal Subunit 50S [J].
Barbet-Massin, Emeline ;
Huang, Chih-Ting ;
Daebel, Venita ;
Hsu, Shang-Te Danny ;
Reif, Bernd .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2015, 54 (14) :4367-4369
[3]   Measurement of Proton Chemical Shifts in Invisible States of Slowly Exchanging Protein Systems by Chemical Exchange Saturation Transfer [J].
Bouvignies, Guillaume ;
Kay, Lewis E. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (49) :14311-14317
[4]   Combined analysis of 15N relaxation data from solid- and solution-state NMR Spectroscopy [J].
Chevelkov, Veniarnin ;
Zhuravleva, Anastasia V. ;
Xue, Yi ;
Reif, Bernd ;
Skrynnikov, Nikolai R. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (42) :12594-+
[5]   Probing exchange kinetics and atomic resolution dynamics in high-molecular-weight complexes using dark-state exchange saturation transfer NMR spectroscopy [J].
Fawzi, Nicolas L. ;
Ying, Jinfa ;
Torchia, Dennis A. ;
Clore, G. Marius .
NATURE PROTOCOLS, 2012, 7 (08) :1523-1533
[6]   Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR [J].
Fawzi, Nicolas L. ;
Ying, Jinfa ;
Ghirlando, Rodolfo ;
Torchia, Dennis A. ;
Clore, G. Marius .
NATURE, 2011, 480 (7376) :268-U161
[7]   Amplitudes and time scales of picosecond-to-microsecond motion in proteins studied by solid-state NMR: a critical evaluation of experimental approaches and application to crystalline ubiquitin [J].
Haller, Jens D. ;
Schanda, Paul .
JOURNAL OF BIOMOLECULAR NMR, 2013, 57 (03) :263-280
[8]   Estimating the time scale of chemical exchange of proteins from measurements of transverse relaxation rates in solution [J].
Ishima, R ;
Torchia, DA .
JOURNAL OF BIOMOLECULAR NMR, 1999, 14 (04) :369-372
[9]   Evolving specificity from variability for protein interaction domains [J].
Kaneko, Tomonori ;
Sidhu, Sachdev S. ;
Li, Shawn S. C. .
TRENDS IN BIOCHEMICAL SCIENCES, 2011, 36 (04) :183-190
[10]   EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR [J].
Kaplan, Mohammed ;
Narasimhan, Siddarth ;
de Heus, Cecilia ;
Mance, Deni ;
van Doorn, Sander ;
Houben, Klaartje ;
Popov-Celeketic, Dusan ;
Damman, Reinier ;
Katrukha, Eugene A. ;
Jain, Purvi ;
Geerts, Willie J. C. ;
Heck, Albert J. R. ;
Folkers, Gert E. ;
Kapitein, Lukas C. ;
Lemeer, Simone ;
Henegouwen, Paul M. P. van Bergen En ;
Baldus, Marc .
CELL, 2016, 167 (05) :1241-+