Identification of long intergenic repeat sequences associated with DNA methylation sites in Caulobacter crescentus and other α-proteobacteria

被引：17

作者：

Chen, SL ^{[1
]}

Shapiro, L ^{[1
]}

机构：

[1] Stanford Univ, Sch Med, Dept Dev Biol, Beckman Ctr, Stanford, CA 94304 USA

来源：

JOURNAL OF BACTERIOLOGY | 2003年 / 185卷 / 16期

关键词：

D O I：

10.1128/JB.185.16.4997-5002.2003

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

A systematic search for motifs associated with CcrM DNA methylation sites revealed four long (>100-bp) motifs (CIR sequences) present in up to 21 copies in Caulobacter crescentus. The CIR1 and CIR2 motifs exhibit a conserved inverted repeat organization, with a CcrM site in the center of one of the repeats.

引用

页码：4997 / 5002

页数：6

共 28 条

[1]

ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999

[2]

[Anonymous], [No title captured]

[3] Automated de novo identification of repeat sequence families in sequenced genomes [J].

Bao, ZR ;

Eddy, SR .

GENOME RESEARCH, 2002, 12 (08) :1269-1276

[4] DNA ADENINE METHYLATION OF GATC SEQUENCES APPEARED RECENTLY IN THE ESCHERICHIA-COLI LINEAGE [J].

BARBEYRON, T ;

KEAN, K ;

FORTERRE, P .

JOURNAL OF BACTERIOLOGY, 1984, 160 (02) :586-590

[5] GenBank [J].

Benson, DA ;

Karsch-Mizrachi, I ;

Lipman, DJ ;

Ostell, J ;

Rapp, BA ;

Wheeler, DL .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :15-18

[6] THE ISOLATION AND CHARACTERIZATION OF THE ESCHERICHIA-COLI DNA ADENINE METHYLASE (DAM) GENE [J].

BROOKS, JE ;

BLUMENTHAL, RM ;

GINGERAS, TR .

NUCLEIC ACIDS RESEARCH, 1983, 11 (03) :837-851

[7] DNA adenine methylase mutants of Salmonella typhimurium show defects in protein secretion, cell invasion, and M cell cytotoxicity [J].

García-Del Portillo, F ;

Pucciarelli, MG ;

Casadesus, J .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (20) :11578-11583

[8] An essential role for DNA adenine methylation in bacterial virulence [J].

Heithoff, DM ;

Sinsheimer, RL ;

Low, DA ;

Mahan, MJ .

SCIENCE, 1999, 284 (5416) :967-970

[9] Molecular switches - the ON and OFF of bacterial phase variation [J].

Henderson, IR ;

Owen, P ;

Nataro, JP .

MOLECULAR MICROBIOLOGY, 1999, 33 (05) :919-932

[10] FAST FOLDING AND COMPARISON OF RNA SECONDARY STRUCTURES [J].

HOFACKER, IL ;

FONTANA, W ;

STADLER, PF ;

BONHOEFFER, LS ;

TACKER, M ;

SCHUSTER, P .

MONATSHEFTE FUR CHEMIE, 1994, 125 (02) :167-188

← 1 2 3 →