Rhodopsin, the membrane protein responsible for dim-light vision, until recently was the only G-protein-coupled receptor (GPCR) with a known crystal structure. As a result, there is enormous interest in studying its structure, dynamics, and function. Here we report the results of three all-atom molecular dynamics simulations, each at least 1.5 mu s, which predict that substantial changes in internal hydration play a functional role in rhodopsin activation. We confirm with H magic angle spinning NMR that the increased hydration is specific to the metarhodopsin-I intermediate. The internal water molecules interact with several conserved residues, suggesting that changes in internal hydration may be important during the activation of other GPCRs. The results serve to illustrate the synergism of long-time-scale molecular dynamics simulations and NMR in enhancing our understanding of GPCR function. (c) 2008 Published by Elsevier Ltd.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Fried, Steven D. E.
Eitel, Anna R.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Eitel, Anna R.
Weerasinghe, Nipuna
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Weerasinghe, Nipuna
Norris, Carolanne E.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Norris, Carolanne E.
Somers, Johnathan D.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Somers, Johnathan D.
Fitzwater, Gabrielle I.
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Fitzwater, Gabrielle I.
Pitman, Michael C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Pitman, Michael C.
Struts, Andrey V.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USA
St Petersburg State Univ, Lab Biomol NMR, St Petersburg, RussiaUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Struts, Andrey V.
Perera, Suchithranga M. D. C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Perera, Suchithranga M. D. C.
Brown, Michael F.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USA
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Chawla, Udeep
Perera, Suchithranga M. D. C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Perera, Suchithranga M. D. C.
Fried, Steven D. E.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Fried, Steven D. E.
Eitel, Anna R.
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Mertz, Blake
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Mertz, Blake
Weerasinghe, Nipuna
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Weerasinghe, Nipuna
Pitman, Michael C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Pitman, Michael C.
Struts, Andrey V.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
St Petersburg State Univ, Lab Biomol NMR, St Petersburg 199034, RussiaUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Struts, Andrey V.
Brown, Michael F.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Univ Arizona, Dept Phys, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Chawla, Udeep
Perera, Suchithranga M. D. C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Perera, Suchithranga M. D. C.
Struts, Andrey V.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USA
St Petersburg State Univ, Lab Biomol NMR, St Petersburg 199034, RussiaUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Struts, Andrey V.
Pitman, Michael C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ USA
Pitman, Michael C.
Brown, Michael F.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ USA
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Fried, Steven D. E.
Hewage, Kushani S. K.
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Eitel, Anna R.
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Eitel, Anna R.
Struts, Audrey, V
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St Petersburg State Univ, Lab Biomol NMR, St Petersburg 199034, RussiaUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Struts, Audrey, V
Weerasinghe, Nipuna
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Weerasinghe, Nipuna
Perera, Suchithranga M. D. C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Perera, Suchithranga M. D. C.
Brown, Michael F.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
St Petersburg State Univ, Lab Biomol NMR, St Petersburg 199034, RussiaUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Struts, Andrey V.
Barmasov, Alexander V.
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St Petersburg State Pediat Med Univ, Dept Biophys, St Petersburg 194100, Russia
St Petersburg State Univ, Dept Phys, St Petersburg 199034, RussiaUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Barmasov, Alexander V.
Fried, Steven D. E.
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Stanford Univ, Dept Chem, Stanford, CA 94305 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Fried, Steven D. E.
Hewage, Kushani S. K.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Hewage, Kushani S. K.
Perera, Suchithranga M. D. C.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Perera, Suchithranga M. D. C.
Brown, Michael F.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
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机构:
Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Weerasinghe, N.
Fried, S.
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Fried, S.
Struts, A.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
St Petersburg State Univ, Lab Biomol NMR, St Petersburg 199034, RussiaUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Struts, A.
Perera, S.
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Univ Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USAUniv Arizona, Dept Chem & Biochem, Tucson, AZ 85721 USA
Perera, S.
Brown, M.
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