First-principles molecular dynamics simulations of condensed-phase V-type nerve agent reaction pathways and energy barriers

被引:4
作者
Gee, Richard H. [1 ]
Kuo, I-Feng W. [1 ]
Chinn, Sarah C. [1 ]
Raber, Ellen [2 ]
机构
[1] Lawrence Livermore Natl Lab, Div Chem Sci, Livermore, CA 94550 USA
[2] Lawrence Livermore Natl Lab, Global Secur Directorate, Livermore, CA 94550 USA
关键词
CHEMICAL WARFARE AGENTS; NUCLEOPHILIC-SUBSTITUTION; DEGRADATION-PRODUCTS; METADYNAMICS; HYDROLYSIS; SOLVOLYSIS; PHOSPHOTRIESTERASE; DETOXIFICATION; S(N)2-AT-P; MECHANISM;
D O I
10.1039/c2cp23126c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Computational studies of condensed-phase chemical reactions are challenging in part because of complexities in understanding the effects of the solvent environment on the reacting chemical species. Such studies are further complicated due to the demanding computational resources required to implement high-level ab initio quantum chemical methods when considering the solvent explicitly. Here, we use first-principles molecular dynamics simulations to examine condensed-phase decontamination reactions of V-type nerve agents in an explicit aqueous solvent. Our results include a detailed study of hydrolysis, base-hydrolysis, and nucleophilic oxidation of both VX and R-VX, as well as their protonated counterparts (i.e., VXH+ and R-VXH+). The decontamination mechanisms and chemical reaction energy barriers, as determined from our simulations, are found to be in good agreement with experiment. The results demonstrate the applicability of using such simulations to assist in understanding new decontamination technologies or other applications that require computational screening of condensed-phase chemical reaction mechanisms.
引用
收藏
页码:3316 / 3322
页数:7
相关论文
共 42 条
  • [11] Hydrolysis of VX on concrete: Rate of degradation by direct surface interrogation using an ion trap secondary ion mass spectrometer
    Groenewold, GS
    Williams, JM
    Appelhans, AD
    Gresham, GL
    Olsbn, JE
    Jeffery, MT
    Rowland, B
    [J]. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2002, 36 (22) : 4790 - 4794
  • [12] THE STABLE STATES PICTURE OF CHEMICAL-REACTIONS .2. RATE CONSTANTS FOR CONDENSED AND GAS-PHASE REACTION MODELS
    GROTE, RF
    HYNES, JT
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1980, 73 (06) : 2715 - 2732
  • [13] Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points
    Henkelman, G
    Jónsson, H
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (22) : 9978 - 9985
  • [14] The effects of substrate orientation on the mechanism of a phosphotriesterase
    Jackson, CJ
    Liu, JW
    Coote, ML
    Ollis, DL
    [J]. ORGANIC & BIOMOLECULAR CHEMISTRY, 2005, 3 (24) : 4343 - 4350
  • [15] Solvolysis of chemical warfare agent VX is more efficient with hydroxylamine anion: A computational study
    Khan, Md Abdul Shafeeuulla
    Kesharwani, Manoj K.
    Bandyopadhyay, Tusar
    Ganguly, Bishwajit
    [J]. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2009, 28 (02) : 177 - 182
  • [16] Assessing the accuracy of metadynamics
    Laio, A
    Rodriguez-Fortea, A
    Gervasio, FL
    Ceccarelli, M
    Parrinello, M
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (14) : 6714 - 6721
  • [17] Escaping free-energy minima
    Laio, A
    Parrinello, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (20) : 12562 - 12566
  • [18] Deprotonation of solvated formic acid: Car-Parrinello and metadynamics simulations
    Lee, JG
    Asciutto, E
    Babin, V
    Sagui, C
    Darden, T
    Roland, C
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (05) : 2325 - 2331
  • [19] Evidence for different types of water participation in the solvolysis of 1-adamantyl, tert-butyl, and methyl chlorides from density functional theory computations
    Martínez, AG
    Vilar, ET
    Barcina, JO
    Cerero, SD
    [J]. JOURNAL OF ORGANIC CHEMISTRY, 2005, 70 (25) : 10238 - 10246
  • [20] NOSE-HOOVER CHAINS - THE CANONICAL ENSEMBLE VIA CONTINUOUS DYNAMICS
    MARTYNA, GJ
    KLEIN, ML
    TUCKERMAN, M
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1992, 97 (04) : 2635 - 2643