Cross-species metabolomic analysis identifies uridine as a potent regeneration promoting factor

被引:85
作者
Liu, Zunpeng [1 ,2 ,3 ]
Li, Wei [4 ,5 ]
Geng, Lingling [4 ,5 ]
Sun, Liang [6 ,7 ]
Wang, Qiaoran [3 ,8 ,9 ]
Yu, Yang [10 ,11 ]
Yan, Pengze [3 ,12 ]
Liang, Chuqian [3 ,12 ]
Ren, Jie [2 ,3 ,8 ,9 ]
Song, Moshi [2 ,3 ,12 ]
Zhao, Qian [4 ,5 ]
Lei, Jinghui [4 ,5 ]
Cai, Yusheng [2 ,12 ,13 ]
Li, Jiaming [3 ,8 ,9 ]
Yan, Kaowen [2 ,12 ,13 ]
Wu, Zeming [2 ,12 ,13 ]
Chu, Qun [1 ,2 ,13 ]
Li, Jingyi [2 ,12 ,13 ]
Wang, Si [4 ,5 ]
Li, Chunyi [14 ]
Han, Jing-Dong J. [15 ]
Hernandez-Benitez, Reyna [16 ]
Shyh-Chang, Ng [1 ,2 ,3 ]
Belmonte, Juan Carlos Izpisua [16 ]
Zhang, Weiqi [2 ,3 ,8 ,9 ]
Qu, Jing [1 ,2 ,3 ,13 ]
Liu, Guang-Hui [2 ,3 ,4 ,5 ,12 ,13 ]
机构
[1] Chinese Acad Sci, Inst Zool, State Key Lab Stem Cell & Reprod Biol, Beijing, Peoples R China
[2] Chinese Acad Sci, Inst Stem Cell & Regenerat, Beijing, Peoples R China
[3] Univ Chinese Acad Sci, Beijing, Peoples R China
[4] Capital Med Univ, Adv Innovat Ctr Human Brain Protect, Natl Clin Res Ctr Geriatr Disorders, Xuanwu Hosp, Beijing, Peoples R China
[5] Capital Med Univ, Xuanwu Hosp, Aging Translat Med Ctr, Beijing, Peoples R China
[6] Chinese Acad Med Sci, Inst Geriatr Med, Beijing Inst Geriatr,Key Lab Geriatr, Beijing Hosp,Natl Ctr Gerontol,Natl Hlth Commiss, Beijing, Peoples R China
[7] Kunming Med Univ, NHC Key Lab Drug Addict Med, Kunming, Yunnan, Peoples R China
[8] Chinese Acad Sci, Beijing Inst Genom, CAS Key Lab Genom & Precis Med, Beijing, Peoples R China
[9] China Natl Ctr Bioinformat, Beijing, Peoples R China
[10] Peking Univ Third Hosp, Ctr Reprod Med, Beijing Key Lab Reprod Endocrinol & Assisted Repr, Beijing, Peoples R China
[11] Peking Univ Third Hosp, Ctr Reprod Med, Key Lab Assisted Reprod, Dept Obstet & Gynecol,Minist Educ, Beijing, Peoples R China
[12] Chinese Acad Sci, Inst Zool, State Key Lab Membrane Biol, Beijing, Peoples R China
[13] Beijing Inst Stem Cell & Regenerat Med, Beijing, Peoples R China
[14] Changchun Sci Tech Univ, Inst Antler Sci & Prod Technol, Changchun, Jilin, Peoples R China
[15] Peking Univ, Acad Adv Interdisciplinary Studies, Peking Tsinghua Ctr Life Sci, Ctr Quantitat Biol CQB, Beijing, Peoples R China
[16] Salk Inst Biol Studies, Gene Express Lab, 10010 N Torrey Pines Rd, La Jolla, CA 92037 USA
基金
国家重点研发计划; 中国国家自然科学基金; 北京市自然科学基金;
关键词
GLUTATHIONE METABOLISM; LIMB REGENERATION; DEER ANTLER; MODEL; POLYAMINES; MOLECULES; AXOLOTL; STRESS; GROWTH; CELLS;
D O I
10.1038/s41421-021-00361-3
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Regenerative capacity declines throughout evolution and with age. In this study, we asked whether metabolic programs underlying regenerative capability might be conserved across species, and if so, whether such metabolic drivers might be harnessed to promote tissue repair. To this end, we conducted metabolomic analyses in two vertebrate organ regeneration models: the axolotl limb blastema and antler stem cells. To further reveal why young individuals have higher regenerative capacity than the elderly, we also constructed metabolic profiles for primate juvenile and aged tissues, as well as young and aged human stem cells. In joint analyses, we uncovered that active pyrimidine metabolism and fatty acid metabolism correlated with higher regenerative capacity. Furthermore, we identified a set of regeneration-related metabolite effectors conserved across species. One such metabolite is uridine, a pyrimidine nucleoside, which can rejuvenate aged human stem cells and promote regeneration of various tissues in vivo. These observations will open new avenues for metabolic intervention in tissue repair and regeneration.
引用
收藏
页数:22
相关论文
共 98 条
  • [1] Aibar S, 2017, NAT METHODS, V14, P1083, DOI [10.1038/NMETH.4463, 10.1038/nmeth.4463]
  • [2] Comparative effects of low-level laser therapy pre- and post-injury on mRNA expression of MyoD, myogenin, and IL-6 during the skeletal muscle repair
    Alves, Agnelo Neves
    Ribeiro, Beatriz Guimares
    Santos Fernandes, Kristianne Porta
    Costa Souza, Nadhia Helena
    Rocha, Lilia Alves
    Nunes, Fabio Daumas
    Bussadori, Sandra Kalil
    Mesquita-Ferrari, Raquel Agnelli
    [J]. LASERS IN MEDICAL SCIENCE, 2016, 31 (04) : 679 - 685
  • [3] The effect of regulating molecules on the structure of the PPAR-RXR complex
    Amber-Vitos, Ortal
    Chaturvedi, Navaneet
    Nachliel, Esther
    Gutman, Menachem
    Tsfadia, Yossi
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS, 2016, 1861 (11): : 1852 - 1863
  • [4] HTSeq-a Python']Python framework to work with high-throughput sequencing data
    Anders, Simon
    Pyl, Paul Theodor
    Huber, Wolfgang
    [J]. BIOINFORMATICS, 2015, 31 (02) : 166 - 169
  • [5] AOYAMA T, 1995, AM J HUM GENET, V57, P273
  • [6] Liver fibrosis
    Bataller, R
    Brenner, DA
    [J]. JOURNAL OF CLINICAL INVESTIGATION, 2005, 115 (02) : 209 - 218
  • [7] SIRT7 antagonizes human stem cell aging as a heterochromatin stabilizer
    Bi, Shijia
    Liu, Zunpeng
    Wu, Zeming
    Wang, Zehua
    Liu, Xiaoqian
    Wang, Si
    Ren, Jie
    Yao, Yan
    Zhang, Weiqi
    Song, Moshi
    Liu, Guang-Hui
    Qu, Jing
    [J]. PROTEIN & CELL, 2020, 11 (07) : 483 - 504
  • [8] Fibro-Adipogenic Progenitors Cross-Talk in Skeletal Muscle: The Social Network
    Biferali, Beatrice
    Proietti, Daisy
    Mozzetta, Chiara
    Madaro, Luca
    [J]. FRONTIERS IN PHYSIOLOGY, 2019, 10
  • [9] Regeneration: sooner rather than later
    Bryant, Susan V.
    Gardiner, David M.
    [J]. INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY, 2018, 62 (6-8) : 363 - 368
  • [10] Integrating single-cell transcriptomic data across different conditions, technologies, and species
    Butler, Andrew
    Hoffman, Paul
    Smibert, Peter
    Papalexi, Efthymia
    Satija, Rahul
    [J]. NATURE BIOTECHNOLOGY, 2018, 36 (05) : 411 - +