Genotype-Phenotype Comparison in POGZ-Related Neurodevelopmental Disorders by Using Clinical Scoring

被引:12
作者
Nagy, Dora [1 ]
Verheyen, Sarah [2 ]
Wigby, Kristen M. [3 ,4 ]
Borovikov, Artem [5 ]
Sharkov, Artem [6 ]
Slegesky, Valerie [7 ]
Larson, Austin [7 ]
Fagerberg, Christina [8 ,9 ]
Brasch-Andersen, Charlotte [8 ,9 ]
Kibaek, Maria [10 ]
Bader, Ingrid [11 ]
Hernan, Rebecca [12 ]
High, Frances A. [13 ,14 ]
Chung, Wendy K. [15 ]
Schieving, Jolanda H. [16 ]
Behunova, Jana [17 ]
Smogavec, Mateja [17 ]
Laccone, Franco [17 ]
Witsch-Baumgartner, Martina [18 ]
Zobel, Joachim [19 ]
Duba, Hans-Christoph [1 ]
Weis, Denisa [1 ]
机构
[1] Johannes Kepler Univ Linz, Kepler Univ Hosp, Inst Med Genet, Med Campus 4, A-4020 Linz, Austria
[2] Med Univ Graz, Inst Human Genet, Diagnost & Res Ctr Mol Biomed, A-8010 Graz, Austria
[3] Univ Calif San Diego, Dept Pediat, San Diego, CA 92161 USA
[4] Rady Childrens Hosp San Diego, Childrens Inst Genom Med, San Diego, CA 92123 USA
[5] Res Ctr Med Genet, Moscow 115478, Russia
[6] Pirogov Russian Natl Res Med Univ, Veltischev Res & Clin Inst Pediat, Moscow 125412, Russia
[7] Univ Colorado, Childrens Hosp Colorado, Sch Med, Dept Pediat,Sect Clin Genet & Metab, Aurora, CO 80045 USA
[8] Odense Univ Hosp, Dept Clin Genet, DK-5000 Odense, Denmark
[9] Univ Southern Denmark, Inst Clin Res, Fac Hlth Sci, DK-5000 Odense, Denmark
[10] Odense Univ Hosp, HC Andersen Childrens Hosp, DK-5000 Odense, Denmark
[11] Salzburger Landeskliniken & Paracelsus Med Univ S, Univ Hosp, Inst Human Genet, A-5020 Salzburg, Austria
[12] Columbia Univ, Irving Med Ctr, Dept Pediat, New York, NY 10032 USA
[13] Massachusetts Gen Hosp, Div Genet, Boston, MA 02114 USA
[14] Boston Childrens Hosp, Dept Surg, Boston, MA 02115 USA
[15] Columbia Univ, Dept Pediat & Med, New York, NY 10032 USA
[16] Radboud Univ Hosp Nijmegen, Dept Pediat Neurol, NL-6525 Nijmegen, Netherlands
[17] Med Univ Vienna, Inst Med Genet, A-1090 Vienna, Austria
[18] Med Univ Innsbruck, Div Human Genet, A-6020 Innsbruck, Austria
[19] Med Univ Graz, Dept Pediat, Div Gen Pediat, A-8036 Graz, Austria
关键词
POGZ gene; neurodevelopmental disorder; White-Sutton syndrome; genotype-phenotype association; clinical scoring; deep facial gestalt analysis; nonsense-mediated RNA decay; ASSOCIATION; SPECTRUM;
D O I
10.3390/genes13010154
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
POGZ-related disorders (also known as White-Sutton syndrome) encompass a wide range of neurocognitive abnormalities and other accompanying anomalies. Disease severity varies widely among POGZ patients and studies investigating genotype-phenotype association are scarce. Therefore, our aim was to collect data on previously unreported POGZ patients and perform a large-scale phenotype-genotype comparison from published data. Overall, 117 POGZ patients' genotype and phenotype data were included in the analysis, including 12 novel patients. A severity scoring system was developed for the comparison. Mild and severe phenotypes were compared with the types and location of the variants and the predicted presence or absence of nonsense-mediated RNA decay (NMD). Missense variants were more often associated with mild phenotypes (p = 0.0421) and truncating variants predicted to escape NMD presented with more severe phenotypes (p < 0.0001). Within this group, variants in the prolin-rich region of the POGZ protein were associated with the most severe phenotypes (p = 0.0004). Our study suggests that gain-of-function or dominant negative effect through escaping NMD and the location of the variants in the prolin-rich domain of the protein may play an important role in the severity of manifestations of POGZ-associated neurodevelopmental disorders.
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页数:18
相关论文
共 36 条
  • [1] Assia Batzir N., 1993, GENEREVIEWS
  • [2] Lens Epithelium-derived Growth Factor/p75 Interacts with the Transposase-derived DDE Domain of PogZ
    Bartholomeeusen, Koen
    Christ, Frauke
    Hendrix, Jelle
    Rain, Jean-Christophe
    Emiliani, Stephane
    Benarous, Richard
    Debyser, Zeger
    Gijsbers, Rik
    De Rijck, Jan
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (17) : 11467 - 11477
  • [3] Phenotypic expansion of POGZ-related intellectual disability syndrome (White-Sutton syndrome)
    Batzir, Nurit Assia
    Posey, Jennifer E.
    Song, Xiaofei
    Akdemir, Zeynep Coban
    Rosenfeld, Jill A.
    Brown, Chester W.
    Chen, Emily
    Holtrop, Shannon G.
    Mizerik, Elizabeth
    Moreno, Margarita Nieto
    Payne, Katelyn
    Raas-Rothschild, Annick
    Scott, Richard
    Vernon, Hilary J.
    Zadeh, Neda
    Lupski, James R.
    Sutton, V. Reid
    [J]. AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2020, 182 (01) : 38 - 52
  • [4] Lens epithelium-derived growth factor (LEDGF/p75) expression in fetal and adult human
    Chylack, LT
    Fu, L
    Mancini, R
    Martin-Rehrmann, MD
    Saunders, AJ
    Konopka, G
    Tian, D
    Hedley-Whyte, ET
    Folkerth, RD
    Goldstein, LE
    [J]. EXPERIMENTAL EYE RESEARCH, 2004, 79 (06) : 941 - 948
  • [5] Identifying Genes Whose Mutant Transcripts Cause Dominant Disease Traits by Potential Gain-of-Function Alleles
    Coban-Akdemir, Zeynep
    White, Janson J.
    Song, Xiaofei
    Jhangiani, Shalini N.
    Fatih, Jawid M.
    Gambin, Tomasz
    Bayram, Yavuz
    Chinn, Ivan K.
    Karaca, Ender
    Punetha, Jaya
    Poli, Cecilia
    Boerwinkle, Eric
    Shaw, Chad A.
    Orange, Jordan S.
    Gibbs, Richard A.
    Lappalainen, Tuuli
    Lupski, James R.
    Carvalho, Claudia M. B.
    [J]. AMERICAN JOURNAL OF HUMAN GENETICS, 2018, 103 (02) : 171 - 187
  • [6] A case of White-Sutton syndrome with previously described loss-of-function variant in DDE domain of POGZ (p.Arg1211*) and Kartagener syndrome
    Dal, Sameer
    Hopper, Bruce
    du Chattel, Maureen Van Rossum
    Goel, Himanshu
    [J]. AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2021, 185 (03) : 1006 - 1007
  • [7] Expanding the phenotypic spectrum of truncating POGZ mutations: Association with CNS malformations, skeletal abnormalities, and distinctive facial dysmorphism
    Dentici, Maria Lisa
    Niceta, Marcello
    Pantaleoni, Francesca
    Barresi, Sabina
    Bencivenga, Paola
    Dallapiccola, Bruno
    Digilio, Maria Cristina
    Tartaglia, Marco
    [J]. AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2017, 173 (07) : 1965 - 1969
  • [8] Expanding the neurological and behavioral phenotype of White-Sutton syndrome: a case report
    Donnarumma, Bernadette
    Riccio, Maria Pia
    Terrone, Gaetano
    Palma, Melania
    Strisciuglio, Pietro
    Scala, Iris
    [J]. ITALIAN JOURNAL OF PEDIATRICS, 2021, 47 (01)
  • [9] POGZ-related epilepsy: Case report and review of the literature
    Ferretti, Alessandro
    Barresi, Sabina
    Trivisano, Marina
    Ciolfi, Andrea
    Dentici, Maria L.
    Radio, Francesca C.
    Vigevano, Federico
    Tartaglia, Marco
    Specchio, Nicola
    [J]. AMERICAN JOURNAL OF MEDICAL GENETICS PART A, 2019, 179 (08) : 1631 - 1636
  • [10] LOVD v.2.0: The Next Generation in Gene Variant Databases
    Fokkema, Ivo F. A. C.
    Taschner, Peter E. M.
    Schaafsma, Gerard C. P.
    Celli, J.
    Laros, Jeroen F. J.
    den Dunnen, Johan T.
    [J]. HUMAN MUTATION, 2011, 32 (05) : 557 - 563