Micellization Studied by GPU-Accelerated Coarse-Grained Molecular Dynamics

被引:63
作者
Levine, Benjamin G. [1 ,2 ]
LeBard, David N. [1 ,2 ]
DeVane, Russell [3 ]
Shinoda, Wataru [4 ]
Kohlmeyer, Axel [1 ,2 ]
Klein, Michael L. [1 ,2 ]
机构
[1] Temple Univ, Inst Computat Mol Sci, Philadelphia, PA 19122 USA
[2] Temple Univ, Dept Chem, Philadelphia, PA 19122 USA
[3] Procter & Gamble Co, Cincinnati, OH 45253 USA
[4] Natl Inst Adv Ind Sci & Technol, Tsukuba, Ibaraki, Japan
基金
美国国家科学基金会;
关键词
QUANTUM-CHEMISTRY CALCULATIONS; GRAPHICAL PROCESSING UNITS; SODIUM DODECYL-SULFATE; WATER OIL INTERFACE; COMPUTER-SIMULATIONS; PREMICELLAR AGGREGATION; MICELLE; MODEL; THERMODYNAMICS; IMPLEMENTATION;
D O I
10.1021/ct2005193
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The computational design of advanced materials based on surfactant self-assembly without ever stepping foot in the laboratory is an important goal, but there are significant barriers to this approach, because of the limited spatial and temporal scales accessible by computer simulations. In this paper, we report our work to bridge the gap between laboratory and computational time scales by implementing the coarse-grained (CG) force field previously reported by Shinoda et al. [Shinoda, W.; DeVane, R.; Klein, M. L. Mol. Simul. 2007, 33, 27-36] into the HOOMD-Blue graphical processing unit (GPU)-accelerated molecular dynamics (MD) software package previously reported by Anderson et al. [Anderson, J. A.; Lorenz, C. D.; Travesset, A. J. Comput. Phys. 2008, 227, 5342-5359]. For a system of 25 750 particles, this implementation provides performance on a single GPU, which is superior to that of a widely used parallel MD simulation code running on an optimally sized CPU-based cluster. Using our GPU setup, we have collected 0.6 ms of MD trajectory data for aqueous solutions of 7 different nonionic polyethylene glycol (PEG) surfactants, with most of the systems studied representing similar to 1 000 000 atoms. From this data, we calculated various properties as a function of the length of the hydrophobic tails and PEG head groups. Specifically, we determined critical micelle concentrations (CMCs), which are in good agreement with experimental data, and characterized the size and shape of micelles. However, even with the microsecond trajectories employed in this study, we observed that the micelles composed of relatively hydrophobic surfactants are continuing to grow at the end of our simulations. This suggests that the final micelle size distributions of these systems are strongly dependent on initial conditions and that either longer simulations or advanced sampling techniques are needed to properly sample their equilibrium distributions. Nonetheless, the combination of coarse-grained modeling and GPU acceleration marks a significant step toward the computational prediction of the thermodynamic properties of slowly evolving surfactant systems.
引用
收藏
页码:4135 / 4145
页数:11
相关论文
共 50 条
  • [1] GPU-Accelerated Molecular Dynamics Simulation to Study Liquid Crystal Phase Transition Using Coarse-Grained Gay-Berne Anisotropic Potential
    Chen, Wenduo
    Zhu, Youliang
    Cui, Fengchao
    Liu, Lunyang
    Sun, Zhaoyan
    Chen, Jizhong
    Li, Yunqi
    PLOS ONE, 2016, 11 (03):
  • [2] Ionomer Self-Assembly in Dilute Solution Studied by Coarse-Grained Molecular Dynamics
    Ghelichi, Mahdi
    Malek, Kourosh
    Eikerling, Michael H.
    MACROMOLECULES, 2016, 49 (04) : 1479 - 1489
  • [3] GPU-Accelerated Molecular Dynamics: Energy Consumption and Performance
    Vecher, Vyacheslav
    Nikolskii, Vsevolod
    Stegailov, Vladimir
    SUPERCOMPUTING, RUSCDAYS 2016, 2016, 687 : 78 - 90
  • [4] The aggregation and diffusion of asphaltenes studied by GPU-accelerated dissipative particle dynamics
    Wang, Sibo
    Xu, Junbo
    Wen, Hao
    COMPUTER PHYSICS COMMUNICATIONS, 2014, 185 (12) : 3069 - 3078
  • [5] Coarse-grained molecular dynamics simulations of clay compression
    Bandera, Sara
    O'Sullivan, Catherine
    Tangney, Paul
    Angioletti-Uberti, Stefano
    COMPUTERS AND GEOTECHNICS, 2021, 138 (138)
  • [6] A coarse-grained molecular dynamics simulation of a sodium dodecyl sulfate micelle in aqueous solution
    Jalili, Seifollah
    Akhavan, Mojdeh
    COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS, 2009, 352 (1-3) : 99 - 102
  • [7] Aggregation Behavior of Medium Chain Fatty Acids Studied by Coarse-Grained Molecular Dynamics Simulation
    Hossain, Md Shakhawath
    Berg, Staffan
    Bergstrom, Christel A. S.
    Larsson, Per
    AAPS PHARMSCITECH, 2019, 20 (02)
  • [8] GPU-accelerated molecular modeling coming of age
    Stone, John E.
    Hardy, David J.
    Ufimtsev, Ivan S.
    Schulten, Klaus
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2010, 29 (02) : 116 - 125
  • [9] Coarse-grained molecular dynamics simulation of tethered lipid assemblies
    Wang, Shihu
    Larson, Ronald G.
    SOFT MATTER, 2013, 9 (02) : 480 - 486
  • [10] Coarse-Grained Molecular Dynamics Study of the Interface of Polymer Blends
    Aoyagi, Takeshi
    NIHON REOROJI GAKKAISHI, 2009, 37 (02) : 75 - 79