An 8-ferroptosis-related genes signature from Bronchoalveolar Lavage Fluid for prognosis in patients with idiopathic pulmonary fibrosis
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作者:
He, Yaowu
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机构:
Harbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
He, Yaowu
[1
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Shang, Yu
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First Hosp Harbin, Dept Respirat, Harbin 150010, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
Shang, Yu
[2
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Li, Yupeng
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Harbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
Li, Yupeng
[1
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Wang, Menghan
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机构:
Harbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
Wang, Menghan
[1
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Yu, Dongping
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Harbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
Yu, Dongping
[1
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Yang, Yi
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Harbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
Yang, Yi
[1
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Ning, Shangwei
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机构:
Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150086, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
Ning, Shangwei
[3
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Chen, Hong
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Harbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R ChinaHarbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
Chen, Hong
[1
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机构:
[1] Harbin Med Univ, Dept Resp & Crit Care Med, Affiliated Hosp 2, Harbin 150086, Peoples R China
[2] First Hosp Harbin, Dept Respirat, Harbin 150010, Peoples R China
[3] Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150086, Peoples R China
Background With the rapid advances of genetic and genomic technologies, the pathophysiological mechanisms of idiopathic pulmonary fibrosis (IPF) were gradually becoming clear, however, the prognosis of IPF was still poor. This study aimed to systematically explore the ferroptosis-related genes model associated with prognosis in IPF patients. Methods Datasets were collected from the Gene Expression Omnibus (GEO). The least absolute shrinkage and selection operator (LASSO) Cox regression analysis was applied to create a multi-gene predicted model from patients with IPF in the Freiburg cohort of the GSE70866 dataset. The Siena cohort and the Leuven cohort were used for validation. Results Nineteen differentially expressed genes (DEGs) between the patients with IPF and control were associated with poor prognosis based on the univariate Cox regression analysis (all P < 0.05). According to the median value of the risk score derived from an 8-ferroptosis-related genes signature, the three cohorts' patients were stratified into two risk groups. Prognosis of high-risk group (high risk score) was significantly poorer compared with low-risk group in the three cohorts. According to multivariate Cox regression analyses, the risk score was an independently predictor for poor prognosis in the three cohorts. Receiver operating characteristic (ROC) curve analysis and decision curve analysis (DCA) confirmed the signature's predictive value in the three cohorts. According to functional analysis, inflammation- and immune-related pathways and biological process could participate in the progression of IPF. Conclusions These results imply that the 8-ferroptosis-related genes signature in the bronchoalveolar lavage samples might be an effective model to predict the poor prognosis of IPF.
机构:Keio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Shinoda, Hiromi
Tasaka, Sadatomo
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Keio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, JapanKeio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Tasaka, Sadatomo
Fujishima, Seitaro
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Keio Univ, Sch Med, Dept Emergency & Crit Med, Tokyo 1608582, JapanKeio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Fujishima, Seitaro
Yamasawa, Wakako
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Keio Univ, Sch Med, Dept Lab Med, Tokyo 1608582, JapanKeio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Yamasawa, Wakako
Miyamoto, Keisuke
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机构:Keio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Miyamoto, Keisuke
Nakano, Yasushi
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机构:Keio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Nakano, Yasushi
Kamata, Hirofumi
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机构:Keio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Kamata, Hirofumi
Hasegawa, Naoki
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机构:Keio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Hasegawa, Naoki
Ishizaka, Akitoshi
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机构:Keio Univ, Div Pulm Med, Sch Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
机构:
Keio Univ, Sch Med, Div Pulm Med, Dept Med,Shinjuku Ku, Tokyo 1608582, JapanKeio Univ, Sch Med, Div Pulm Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Tasaka, Sadatomo
Mizoguchi, Kosuke
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机构:Keio Univ, Sch Med, Div Pulm Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Mizoguchi, Kosuke
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机构:
Funatsu, Yohei
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机构:
Namkoong, Ho
Yamasawa, Wakako
论文数: 0引用数: 0
h-index: 0
机构:
Keio Univ, Sch Med, Dept Lab Med, Tokyo 1608582, JapanKeio Univ, Sch Med, Div Pulm Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Yamasawa, Wakako
Ishii, Makoto
论文数: 0引用数: 0
h-index: 0
机构:Keio Univ, Sch Med, Div Pulm Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Ishii, Makoto
Hasegawa, Naoki
论文数: 0引用数: 0
h-index: 0
机构:
Keio Univ, Sch Med, Ctr Infect Dis & Infect Control, Tokyo 1608582, JapanKeio Univ, Sch Med, Div Pulm Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
Hasegawa, Naoki
Betsuyaku, Tomoko
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机构:Keio Univ, Sch Med, Div Pulm Med, Dept Med,Shinjuku Ku, Tokyo 1608582, Japan
机构:
Anhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Wang, Enze
Wang, Yue
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机构:
Hefei Second Peoples Hosp, Dept Infect Dis, Hefei 230001, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Wang, Yue
Zhou, Sijing
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机构:
Anhui Med Univ, Hefei Clin Coll 3, Dept Occupat Med, Hefei 230022, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Zhou, Sijing
Xia, Xingyuan
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Anhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Xia, Xingyuan
Han, Rui
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机构:
Anhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Han, Rui
Fei, Guanghe
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机构:
Anhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Anhui Med Univ, Affiliated Hosp 1, Dept Pulm & Crit Care Med, Hefei, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Fei, Guanghe
Zeng, Daxiong
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机构:
Suzhou Dushu Lake Hosp, Dept Pulm & Crit Care Med, Suzhou 15006, Peoples R China
Soochow Univ, Med Ctr, Dushu Lake Hosp, Dept Pulm & Crit Care Med, Suzhou 215006, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Zeng, Daxiong
Wang, Ran
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机构:
Anhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R ChinaAnhui Med Univ, Affiliated Hosp 1, Dept Resp & Crit Care Med, Hefei 230022, Peoples R China
Wang, Ran
INTERNATIONAL JOURNAL OF MEDICAL SCIENCES,
2022,
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