Systematic review of current natural language processing methods and applications in cardiology
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作者:
Turchioe, Meghan Reading
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Weill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USAWeill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
Turchioe, Meghan Reading
[1
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Volodarskiy, Alexander
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NewYork Presbyterian Hosp, Div Cardiol, Dept Med, New York, NY USAWeill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
Volodarskiy, Alexander
[2
]
Pathak, Jyotishman
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Weill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USAWeill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
Pathak, Jyotishman
[1
]
Wright, Drew N.
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Weill Cornell Med Coll, Samuel J Wood Lib C Starr Biomed Informat Ctr, New York, NY USAWeill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
Wright, Drew N.
[3
]
Tcheng, James Enlou
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Duke Univ, Dept Med, Sch Med, Durham, NC USAWeill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
Tcheng, James Enlou
[4
]
Slotwiner, David
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Weill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
NewYork Presbyterian Hosp, Div Cardiol, Dept Med, New York, NY USAWeill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
Slotwiner, David
[1
,2
]
机构:
[1] Weill Cornell Med, Div Hlth Informat, Dept Populat Hlth Sci, New York, NY 10021 USA
[2] NewYork Presbyterian Hosp, Div Cardiol, Dept Med, New York, NY USA
[3] Weill Cornell Med Coll, Samuel J Wood Lib C Starr Biomed Informat Ctr, New York, NY USA
Natural language processing (NLP) is a set of automated methods to organise and evaluate the information contained in unstructured clinical notes, which are a rich source of real-world data from clinical care that may be used to improve outcomes and understanding of disease in cardiology. The purpose of this systematic review is to provide an understanding of NLP, review how it has been used to date within cardiology and illustrate the opportunities that this approach provides for both research and clinical care. We systematically searched six scholarly databases (ACM Digital Library, Arxiv, Embase, IEEE Explore, PubMed and Scopus) for studies published in 2015-2020 describing the development or application of NLP methods for clinical text focused on cardiac disease. Studies not published in English, lacking a description of NLP methods, non-cardiac focused and duplicates were excluded. Two independent reviewers extracted general study information, clinical details and NLP details and appraised quality using a checklist of quality indicators for NLP studies. We identified 37 studies developing and applying NLP in heart failure, imaging, coronary artery disease, electrophysiology, general cardiology and valvular heart disease. Most studies used NLP to identify patients with a specific diagnosis and extract disease severity using rule-based NLP methods. Some used NLP algorithms to predict clinical outcomes. A major limitation is the inability to aggregate findings across studies due to vastly different NLP methods, evaluation and reporting. This review reveals numerous opportunities for future NLP work in cardiology with more diverse patient samples, cardiac diseases, datasets, methods and applications.
机构:
Univ Novi Sad, Fac Tech Sci, Trg Dositeja Obradovica 6, Novi Sad 21002, SerbiaUniv Novi Sad, Fac Tech Sci, Trg Dositeja Obradovica 6, Novi Sad 21002, Serbia
Kovacevic, Aleksandar
Basaragin, Bojana
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Inst Artificial Intelligence Res & Dev Serbia, Fruskogorska 1, Novi Sad 21000, SerbiaUniv Novi Sad, Fac Tech Sci, Trg Dositeja Obradovica 6, Novi Sad 21002, Serbia
Basaragin, Bojana
Milosevic, Nikola
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Inst Artificial Intelligence Res & Dev Serbia, Fruskogorska 1, Novi Sad 21000, Serbia
Bayer AG, Res & Dev, Mullerstr 173, D-13342 Berlin, GermanyUniv Novi Sad, Fac Tech Sci, Trg Dositeja Obradovica 6, Novi Sad 21002, Serbia
Milosevic, Nikola
Nenadic, Goran
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Univ Manchester, Dept Comp Sci, Manchester, EnglandUniv Novi Sad, Fac Tech Sci, Trg Dositeja Obradovica 6, Novi Sad 21002, Serbia
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Alexandru Ioan Cuza Univ, Fac Econ & Business Adm, Dept Accounting Business Informat Syst & Stat, Iasi 700506, RomaniaAlexandru Ioan Cuza Univ, Fac Econ & Business Adm, Dept Accounting Business Informat Syst & Stat, Iasi 700506, Romania
Necula, Sabina-Cristiana
Dumitriu, Florin
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Alexandru Ioan Cuza Univ, Fac Econ & Business Adm, Dept Accounting Business Informat Syst & Stat, Iasi 700506, RomaniaAlexandru Ioan Cuza Univ, Fac Econ & Business Adm, Dept Accounting Business Informat Syst & Stat, Iasi 700506, Romania
Dumitriu, Florin
Greavu-Serban, Valerica
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Alexandru Ioan Cuza Univ, Fac Econ & Business Adm, Dept Accounting Business Informat Syst & Stat, Iasi 700506, RomaniaAlexandru Ioan Cuza Univ, Fac Econ & Business Adm, Dept Accounting Business Informat Syst & Stat, Iasi 700506, Romania
机构:
Columbia Univ, Sch Nursing, 560 W 168th St, New York, NY 10032 USA
Columbia Univ, Dept Neurol, New York, NY 10032 USAColumbia Univ, Sch Nursing, 560 W 168th St, New York, NY 10032 USA
Idnay, Betina
Dreisbach, Caitlin
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Columbia Univ, Data Sci Inst, New York, NY 10032 USAColumbia Univ, Sch Nursing, 560 W 168th St, New York, NY 10032 USA
Dreisbach, Caitlin
Weng, Chunhua
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Columbia Univ, Dept Biomed Informat, New York, NY 10032 USAColumbia Univ, Sch Nursing, 560 W 168th St, New York, NY 10032 USA
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Tel Aviv Univ, Fac Med, IL-5224213 Tel Aviv, IsraelTel Aviv Univ, Fac Med, IL-5224213 Tel Aviv, Israel
Omar, Mahmud
Naffaa, Mohammad E.
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Galilee Med Ctr, Rheumatol Unit, Nahariyya, IsraelTel Aviv Univ, Fac Med, IL-5224213 Tel Aviv, Israel
Naffaa, Mohammad E.
Glicksberg, Benjamin S.
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Charles Bronfman Inst Personalized Med, Icahn Sch Med Mt Sinai, New York, NY USA
Icahn Sch Med Mt Sinai, Div Data Driven & Digital Med D3M, New York, NY USATel Aviv Univ, Fac Med, IL-5224213 Tel Aviv, Israel
Glicksberg, Benjamin S.
Reuveni, Hagar
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Tel Aviv Univ, Sheba Med Ctr, Div Diag Imaging, Ramat Gan, IsraelTel Aviv Univ, Fac Med, IL-5224213 Tel Aviv, Israel
Reuveni, Hagar
Nadkarni, Girish N.
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Charles Bronfman Inst Personalized Med, Icahn Sch Med Mt Sinai, New York, NY USA
Icahn Sch Med Mt Sinai, Div Data Driven & Digital Med D3M, New York, NY USATel Aviv Univ, Fac Med, IL-5224213 Tel Aviv, Israel
Nadkarni, Girish N.
Klang, Eyal
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Charles Bronfman Inst Personalized Med, Icahn Sch Med Mt Sinai, New York, NY USA
Icahn Sch Med Mt Sinai, Div Data Driven & Digital Med D3M, New York, NY USATel Aviv Univ, Fac Med, IL-5224213 Tel Aviv, Israel
机构:
Univ Fed Rio Grande do Sul, Ind Engn Dept, Ave Osvaldo Aranha 55, Porto Alegre, RS, BrazilUniv Fed Rio Grande do Sul, Ind Engn Dept, Ave Osvaldo Aranha 55, Porto Alegre, RS, Brazil
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Univ Manchester, Oxford Rd, Manchester M13 9PL, Lancs, EnglandUniv Manchester, Oxford Rd, Manchester M13 9PL, Lancs, England
Locke, Saskia
Bashall, Anthony
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Zenzium Ltd, Alderley Pk,Congleton Rd, Macclesfield SK10 4TG, Cheshire, EnglandUniv Manchester, Oxford Rd, Manchester M13 9PL, Lancs, England
Bashall, Anthony
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Al-Adely, Sarah
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Moore, John
Wilson, Anthony
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Univ Manchester, Oxford Rd, Manchester M13 9PL, Lancs, England
Manchester Univ NHS Fdn Trust, Manchester Royal Infirm, Oxford Rd, Manchester M13 9WL, Lancs, EnglandUniv Manchester, Oxford Rd, Manchester M13 9PL, Lancs, England
Wilson, Anthony
Kitchen, Gareth B.
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Univ Manchester, Oxford Rd, Manchester M13 9PL, Lancs, England
Manchester Univ NHS Fdn Trust, Manchester Royal Infirm, Oxford Rd, Manchester M13 9WL, Lancs, EnglandUniv Manchester, Oxford Rd, Manchester M13 9PL, Lancs, England
机构:
Weill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Patra, Braja G.
Sharma, Mohit M.
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Weill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Sharma, Mohit M.
Vekaria, Veer
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Weill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Vekaria, Veer
Adekkanattu, Prakash
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Weill Cornell Med, Informat Technol & Serv, New York, NY 10065 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Adekkanattu, Prakash
Patterson, Olga, V
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Univ Utah, Dept Internal Med, Div Epidemiol, Salt Lake City, UT 84112 USA
US Dept Vet Affairs, Salt Lake City, UT USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Patterson, Olga, V
Glicksberg, Benjamin
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Icahn Sch Med Mt Sinai, New York, NY 10029 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Glicksberg, Benjamin
Lepow, Lauren A.
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Icahn Sch Med Mt Sinai, New York, NY 10029 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Lepow, Lauren A.
Ryu, Euijung
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Mayo Clin, Dept Quantitat Hlth Sci, Rochester, MN USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Ryu, Euijung
Biernacka, Joanna M.
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Mayo Clin, Dept Quantitat Hlth Sci, Rochester, MN USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Biernacka, Joanna M.
Furmanchuk, Al'ona
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Northwestern Univ, Chicago, IL 60611 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Furmanchuk, Al'ona
George, Thomas J.
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Univ Florida, Dept Hlth Outcomes & Biomed Informat, Gainesville, FL USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
George, Thomas J.
Hogan, William
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Univ Florida, Coll Med, Dept Med, Div Hematol & Oncol, Gainesville, FL USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Hogan, William
Wu, Yonghui
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Univ Florida, Dept Hlth Outcomes & Biomed Informat, Gainesville, FL USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Wu, Yonghui
Yang, Xi
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Univ Florida, Dept Hlth Outcomes & Biomed Informat, Gainesville, FL USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Yang, Xi
Bian, Jiang
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Univ Florida, Dept Hlth Outcomes & Biomed Informat, Gainesville, FL USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Bian, Jiang
Weissman, Myrna
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Columbia Univ, Vagelos Coll Phys & Surg, New York, NY USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Weissman, Myrna
Wickramaratne, Priya
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Columbia Univ, Vagelos Coll Phys & Surg, New York, NY USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Wickramaratne, Priya
Mann, J. John
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Columbia Univ, Vagelos Coll Phys & Surg, New York, NY USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Mann, J. John
Olfson, Mark
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Columbia Univ, Vagelos Coll Phys & Surg, New York, NY USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Olfson, Mark
Campion, Thomas R., Jr.
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Weill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Weill Cornell Med, Informat Technol & Serv, New York, NY 10065 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Campion, Thomas R., Jr.
Weiner, Mark
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Weill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
Weiner, Mark
Pathak, Jyotishman
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Weill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USAWeill Cornell Med, Dept Populat Hlth Sci, 425 E 61st St,Suite 301, New York, NY 10065 USA
机构:
UCL, Inst Hlth Informat, London NW1 2DA, England
Univ Manchester, Div Informat Imaging & Data Sci, Manchester M13 9PL, EnglandUCL, Inst Hlth Informat, London NW1 2DA, England
Arowosegbe, Abayomi
Oyelade, Tope
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UCL, Div Med, London NW3 2PF, EnglandUCL, Inst Hlth Informat, London NW1 2DA, England