Next-Generation Bioinformatics Approaches and Resources for Coronavirus Vaccine Discovery and Development-A Perspective Review

被引:14
作者
Chatterjee, Rahul [1 ]
Ghosh, Mrinmoy [2 ]
Sahoo, Susrita [1 ]
Padhi, Santwana [2 ]
Misra, Namrata [1 ,2 ]
Raina, Visakha [1 ]
Suar, Mrutyunjay [1 ,2 ]
Son, Young-Ok [3 ,4 ,5 ,6 ]
机构
[1] Kalinga Inst Ind Technol, Sch Biotechnol, Bhubaneswar 751024, India
[2] KIIT Technol Business Incubator, Bhubaneswar 751024, India
[3] Jeju Natl Univ, Fac Biotechnol, Dept Anim Biotechnol, Jeju 63243, South Korea
[4] Jeju Natl Univ, Biohlth Mat Core, Facil Ctr, Jeju 63243, South Korea
[5] Jeju Natl Univ, Pract Translat Res Ctr, Jeju 63243, South Korea
[6] Jeju Natl Univ, Interdisciplinary Grad Program Adv Convergence Te, Jeju 63243, South Korea
基金
新加坡国家研究基金会;
关键词
bioinformatics resources; coronavirus; immunoinformatics; vaccine; epitope; EPIDEMIOLOGY; RECOGNITION;
D O I
10.3390/vaccines9080812
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
COVID-19 is a contagious disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To fight this pandemic, which has caused a massive death toll around the globe, researchers are putting efforts into developing an effective vaccine against the pathogen. As genome sequencing projects for several coronavirus strains have been completed, a detailed investigation of the functions of the proteins and their 3D structures has gained increasing attention. These high throughput data are a valuable resource for accelerating the emerging field of immuno-informatics, which is primarily aimed toward the identification of potential antigenic epitopes in viral proteins that can be targeted for the development of a vaccine construct eliciting a high immune response. Bioinformatics platforms and various computational tools and databases are also essential for the identification of promising vaccine targets making the best use of genomic resources, for further experimental validation. The present review focuses on the various stages of the vaccine development process and the vaccines available for COVID-19. Additionally, recent advances in genomic platforms and publicly available bioinformatics resources in coronavirus vaccine discovery together with related immunoinformatics databases and advances in technology are discussed.
引用
收藏
页数:17
相关论文
共 49 条
[1]   Current Status of Epidemiology, Diagnosis, Therapeutics, and Vaccines for Novel Coronavirus Disease 2019 (COVID-19) [J].
Ahn, Dae-Gyun ;
Shin, Hye-Jin ;
Kim, Mi-Hwa ;
Lee, Sunhee ;
Kim, Hae-Soo ;
Myoung, Jinjong ;
Kim, Bum-Tae ;
Kim, Seong-Jun .
JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, 2020, 30 (03) :313-324
[2]   SARS-CoV-2 Vaccines: Status Report [J].
Amanat, Fatima ;
Krammer, Florian .
IMMUNITY, 2020, 52 (04) :583-589
[3]   Alteration of epitope recognition pattern in Ag85B and ESAT-6 has a profound influence on vaccine-induced protection against Mycobacterium tuberculosis [J].
Bennekov, Thomas ;
Dietrich, Jes ;
Rosenkrands, Ida ;
Stryhn, Anette ;
Doherty, T. Mark ;
Andersen, Peter .
EUROPEAN JOURNAL OF IMMUNOLOGY, 2006, 36 (12) :3346-3355
[4]   Escape of pathogens from the host immune response by mutations and mimicry. Possible means to improve vaccine performance [J].
Berger, Gerard .
MEDICAL HYPOTHESES, 2015, 85 (05) :664-669
[5]  
Blundell T.L, 2020, BRIEF BIOINFORM, DOI [10.1101/2020.02.05.920009, DOI 10.1101/2020.02.05.920009]
[6]   Towards effective COVID-19 vaccines: Updates, perspectives and challenges (Review) [J].
Calina, Daniela ;
Docea, Anca Oana ;
Petrakis, Demetrios ;
Egorov, Alex M. ;
Ishmukhametov, Aydar A. ;
Gabibov, Alexsandr G. ;
Shtilman, Michael, I ;
Kostoff, Ronald ;
Carvalho, Felix ;
Vinceti, Marco ;
Spandidos, Demetrios A. ;
Tsatsakis, Aristidis .
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 2020, 46 (01) :3-16
[7]   Genomic variance of the 2019-nCoV coronavirus [J].
Ceraolo, Carmine ;
Giorgi, Federico M. .
JOURNAL OF MEDICAL VIROLOGY, 2020, 92 (05) :522-528
[8]   Innate immune recognition of the microbiota promotes host-microbial symbiosis [J].
Chu, Hiutung ;
Mazmanian, Sarkis K. .
NATURE IMMUNOLOGY, 2013, 14 (07) :668-675
[9]   Paths to a malaria vaccine illuminated by parasite genomics [J].
Conway, David J. .
TRENDS IN GENETICS, 2015, 31 (02) :97-107
[10]   Immune correlates of vaccine protection against HIV-1 acquisition [J].
Corey, Lawrence ;
Gilbert, Peter B. ;
Tomaras, Georgia D. ;
Haynes, Barton F. ;
Pantaleo, Giuseppe ;
Fauci, Anthony S. .
SCIENCE TRANSLATIONAL MEDICINE, 2015, 7 (310)