Complete genome sequence of a divergent strain of Japanese yam mosaic virus from China

被引：9
作者：
Lan, Pingxiu [1 ,2 ]
Li, Fan [2 ]
Wang, Mingqiang [1 ]
Li, Ruhui [1 ]
机构：
[1] ARS, USDA, Natl Germplasm Resources Lab, Beltsville, MD 20705 USA
[2] Yunnan Agr Univ, Kunming 650201, Yunnan, Peoples R China
来源：
ARCHIVES OF VIROLOGY | 2015年 / 160卷 / 02期
关键词：
COMPLETE NUCLEOTIDE-SEQUENCE; RNA; PCR;
D O I：
10.1007/s00705-014-2231-z
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
A novel strain of Japanese yam mosaic virus (JYMV-CN) was identified in a yam plant with foliar mottle symptoms in China. The complete genomic sequence of JYMV-CN was determined. Its genomic sequence of 9701 nucleotides encodes a polyprotein of 3247 amino acids. Its organization is virtually identical to that of two JYMV isolates from Japan. With the latter, it shares nucleotide sequence identities of only 74.7-74.8 %, indicating it might be a member of a new species. However, sequence analysis of the polyprotein and individual proteins suggested that the Chinese isolate is a divergent JYMV strain in the process of speciation.
引用
收藏
页码：573 / 576
页数：4
相关论文
共 18 条
[1]   Molecular criteria for genus and species discrimination within the family Potyviridae [J].
Adams, MJ ;
Antoniw, JF ;
Fauquet, CM .
ARCHIVES OF VIROLOGY, 2005, 150 (03) :459-479
[2]  
[Anonymous], FAO STAT YB 2010
[3]   Crops that feed the World 1. Yams Yams for income and food security [J].
Asiedu, Robert ;
Sartie, Alieu .
FOOD SECURITY, 2010, 2 (04) :305-315
[4]   An overlapping essential gene in the Potyviridae [J].
Chung, Betty Y. -W. ;
Miller, W. Allen ;
Atkins, John F. ;
Firth, Andrew E. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (15) :5897-5902
[5]   Survey of the incidence and distribution of five viruses infecting yams in the major yam-producing zones in Benin [J].
Eni, A. O. ;
Hughes, J. d'A. ;
Rey, M. E. C. .
ANNALS OF APPLIED BIOLOGY, 2008, 153 (02) :223-232
[6]   Survey of the incidence and distribution of viruses infecting yam (Dioscorea spp.) in Ghana and Togo [J].
Eni, A. O. ;
Hughes, J. d'A. ;
Asiedu, R. ;
Rey, M. E. C. .
ANNALS OF APPLIED BIOLOGY, 2010, 156 (02) :243-251
[7]   Complete nucleotide sequence of the genomic RNA of a Japanese yam mosaic virus, a new potyvirus in Japan [J].
Fuji, S ;
Nakamae, H .
ARCHIVES OF VIROLOGY, 1999, 144 (02) :231-240
[8]   Complete nucleotide sequence of the geonomic RNA of a mild strain of Japanese yam mosaic potyvirus [J].
Fuji, S ;
Nakamae, H .
ARCHIVES OF VIROLOGY, 2000, 145 (03) :635-640
[9]   Potyviruses and the Digital Revolution [J].
Gibbs, Adrian ;
Ohshima, Kazusato .
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 48, 2010, 48 :205-223
[10]   Design and application of two novel degenerate primer pairs for the detection and complete genomic characterization of potyviruses [J].
Ha, C. ;
Coombs, S. ;
Revill, P. A. ;
Harding, R. M. ;
Vu, M. ;
Dale, J. L. .
ARCHIVES OF VIROLOGY, 2008, 153 (01) :25-36
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