SLE redefined on the basis of molecular pathways

被引:6
作者
Barturen, Guillermo [1 ]
Alarcon-Riquelme, Marta E. [1 ,2 ]
机构
[1] Univ Granada, Pfizer, Andalusian Govt Ctr Genom & Oncol Res GENYO, PTS, Av Ilustrac 114, Granada 18016, Spain
[2] Karolinska Inst, Inst Environm Med, Unit Inflammatory Chron Dis, S-17777 Solna, Sweden
来源
BEST PRACTICE & RESEARCH IN CLINICAL RHEUMATOLOGY | 2017年 / 31卷 / 03期
关键词
Interferonopathies; Transcriptome; Epigenome; Genome-wide association studies; Human leukocyte antigens; Aicardi-Goutieres syndrome; C1q deficiency; TREX1; Neuropsychiatric SLE; Omics; SYSTEMIC-LUPUS-ERYTHEMATOSUS; GENOME-WIDE ASSOCIATION; GENE-EXPRESSION SIGNATURE; NAIVE CD4+T CELLS; DNA METHYLATION; RHEUMATOID-ARTHRITIS; AUTOIMMUNE-DISEASE; T-CELLS; SJOGRENS-SYNDROME; SYNOVIAL TISSUE;
D O I
10.1016/j.berh.2017.09.006
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
The implementation of precision medicine requires the recruiting of patients in statistically enough numbers, the possibility of obtaining enough materials, and the integration of data from various platforms, which are all real limitations. These types of studies have been performed extensively in cancer but barely on systemic lupus erythematosus (SLE) or other rheumatic diseases. To consider the practical use of the information obtained from such studies, we have to take into account the best biological fluid to use, the ease to perform the analysis in clinical practice, and its relevance to clinical practice. Here we review the most relevant studies that have performed analyses that attempt to classify or stratify SLE. We focus on two types of studies: those that stratify individuals diagnosed with SLE and those that compare SLE with other autoimmune diseases, defining differences and similarities that may be clinically relevant in the future. (C) 2017 Elsevier Ltd. All rights reserved.
引用
收藏
页码:291 / 305
页数:15
相关论文
共 98 条
[51]   Abnormal DNA methylation in CD4+ T cells from patients with systemic lupus erythematosus, systemic sclerosis, and dermatomyositis [J].
Lei, W. ;
Luo, Y. ;
Yan, K. ;
Zhao, S. ;
Li, Y. ;
Qiu, X. ;
Zhou, Y. ;
Long, H. ;
Zhao, M. ;
Liang, Y. ;
Su, Y. ;
Lu, Q. .
SCANDINAVIAN JOURNAL OF RHEUMATOLOGY, 2009, 38 (05) :369-374
[52]   Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogren's syndrome [J].
Lessard, Christopher J. ;
Li, He ;
Adrianto, Indra ;
Ice, John A. ;
Rasmussen, Astrid ;
Grundahl, Kiely M. ;
Kelly, Jennifer A. ;
Dozmorov, Mikhail G. ;
Miceli-Richard, Corinne ;
Bowman, Simon ;
Lester, Sue ;
Eriksson, Per ;
Eloranta, Maija-Leena ;
Brun, Johan G. ;
Goransson, Lasse G. ;
Harboe, Erna ;
Guthridge, Joel M. ;
Kaufman, Kenneth M. ;
Kvarnstrom, Marika ;
Jazebi, Helmi ;
Graham, Deborah S. Cunninghame ;
Grandits, Martha E. ;
Nazmul-Hossain, Abu N. M. ;
Patel, Ketan ;
Adler, Adam J. ;
Maier-Moore, Jacen S. ;
Farris, A. Darise ;
Brennan, Michael T. ;
Lessard, James A. ;
Chodosh, James ;
Gopalakrishnan, Rajaram ;
Hefner, Kimberly S. ;
Houston, Glen D. ;
Huang, Andrew J. W. ;
Hughes, Pamela J. ;
Lewis, David M. ;
Radfar, Lida ;
Rohrer, Michael D. ;
Stone, Donald U. ;
Wren, Jonathan D. ;
Vyse, Timothy J. ;
Gaffney, Patrick M. ;
James, Judith A. ;
Omdal, Roald ;
Wahren-Herlenius, Marie ;
Illei, Gabor G. ;
Witte, Torsten ;
Jonsson, Roland ;
Rischmueller, Maureen ;
Ronnblom, Lars .
NATURE GENETICS, 2013, 45 (11) :1284-+
[53]   Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases [J].
Li, Yun R. ;
Li, Jin ;
Zhao, Sihai D. ;
Bradfield, Jonathan P. ;
Mentch, Frank D. ;
Maggadottir, S. Melkorka ;
Hou, Cuiping ;
Abrams, Debra J. ;
Chang, Diana ;
Gao, Feng ;
Guo, Yiran ;
Wei, Zhi ;
Connolly, John J. ;
Cardinale, Christopher J. ;
Bakay, Marina ;
Glessner, Joseph T. ;
Li, Dong ;
Kao, Charlly ;
Thomas, Kelly A. ;
Qiu, Haijun ;
Chiavacci, Rosetta M. ;
Kim, Cecilia E. ;
Wang, Fengxiang ;
Snyder, James ;
Richie, Marylyn D. ;
Flato, Berit ;
Forre, Oystein ;
Denson, Lee A. ;
Thompson, Susan D. ;
Becker, Mara L. ;
Guthery, Stephen L. ;
Latiano, Anna ;
Perez, Elena ;
Resnick, Elena ;
Russell, Richard K. ;
Wilson, David C. ;
Silverberg, Mark S. ;
Annese, Vito ;
Lie, Benedicte A. ;
Punaro, Marilynn ;
Dubinsky, Marla C. ;
Monos, Dimitri S. ;
Strisciuglio, Caterina ;
Staiano, Annamaria ;
Miele, Erasmo ;
Kugathasan, Subra ;
Ellis, Justine A. ;
Munro, Jane E. ;
Sullivan, Kathleen E. ;
Wise, Carol A. .
NATURE MEDICINE, 2015, 21 (09) :1018-+
[54]   DNA demethylation of CD40l in CD4+ T cells from women with systemic sclerosis A possible explanation for female susceptibility [J].
Lian, XiaoRi ;
Xiao, Rong ;
Hu, XinHong ;
Kanekura, Takuro ;
Jiang, HongYan ;
Li, YaPing ;
Wang, YaoYao ;
Yang, Yan ;
Zhao, Ming ;
Lu, QianJin .
ARTHRITIS AND RHEUMATISM, 2012, 64 (07) :2338-2345
[55]   CD40L demethylation in CD4 + T cells from women with rheumatoid arthritis [J].
Liao, J. ;
Liang, G. ;
Xie, S. ;
Zhao, H. ;
Zuo, X. ;
Li, F. ;
Chen, J. ;
Zhao, M. ;
Chan, T. M. ;
Lu, Q. .
CLINICAL IMMUNOLOGY, 2012, 145 (01) :13-18
[56]   Identification of gene expression signatures in autoimmune disease without the influence of familial resemblance [J].
Liu, Z ;
Maas, K ;
Aune, TM .
HUMAN MOLECULAR GENETICS, 2006, 15 (03) :501-509
[57]   IRF4 Newly Identified as a Common Susceptibility Locus for Systemic Sclerosis and Rheumatoid Arthritis in a Cross-Disease Meta-Analysis of Genome-Wide Association Studies [J].
Lopez-Isac, Elena ;
Martin, Jose-Ezequiel ;
Assassi, Shervin ;
Simeon, Carmen P. ;
Carreira, Patricia ;
Ortego-Centeno, Norberto ;
Freire, Mayka ;
Beltran, Emma ;
Narvaez, Javier ;
Alegre-Sancho, Juan J. ;
Fernandez-Gutierrez, Benjamin ;
Balsa, Alejandro ;
Ortiz, Ana M. ;
Gonzalez-Gay, Miguel A. ;
Beretta, Lorenzo ;
Santaniello, Alessandro ;
Bellocchi, Chiara ;
Lunardi, Claudio ;
Moroncini, Gianluca ;
Gabrielli, Armando ;
Witte, Torsten ;
Hunzelmann, Nicolas ;
Distler, Jorg H. W. ;
Riekemasten, Gabriella ;
van der Helm-Van Mil, Annette H. ;
de Vries-Bouwstra, Jeska ;
Magro-Checa, Cesar ;
Voskuyl, Alexandre E. ;
Vonk, Madelon C. ;
Molberg, Oyvind ;
Merriman, Tony ;
Hesselstrand, Roger ;
Nordin, Annika ;
Padyukov, Leonid ;
Herrick, Ariane ;
Eyre, Steve ;
Koeleman, Bobby P. C. ;
Denton, Christopher P. ;
Fonseca, Carmen ;
Radstake, Timothy R. D. J. ;
Worthington, Jane ;
Mayes, Maureen D. ;
Martin, Javier .
ARTHRITIS & RHEUMATOLOGY, 2016, 68 (09) :2338-2344
[58]   Demethylation of CD40LG on the inactive X in T cells from women with lupus [J].
Lu, Qianjin ;
Wu, Ailing ;
Tesmer, Laura ;
Ray, Donna ;
Yousif, Neda ;
Richardson, Bruce .
JOURNAL OF IMMUNOLOGY, 2007, 179 (09) :6352-6358
[59]   Dysregulation of innate and adaptive serum mediators precedes systemic lupus erythematosus classification and improves prognostic accuracy of autoantibodies [J].
Lu, Rufei ;
Munroe, Melissa E. ;
Guthridge, Joel M. ;
Bean, Krista M. ;
Fife, Dustin A. ;
Chen, Hua ;
Slight-Webb, Samantha R. ;
Keith, Michael P. ;
Harley, John B. ;
James, Judith A. .
JOURNAL OF AUTOIMMUNITY, 2016, 74 :182-193
[60]   Systemic Lupus Erythematosus and Deficiencies of Early Components of the Complement Classical Pathway [J].
Lunz Macedo, Ana Catarina ;
Isaac, Lourdes .
FRONTIERS IN IMMUNOLOGY, 2016, 7