Mechanistic similarity and diversity among the guanidine-modifying members of the pentein superfamily

被引:29
作者
Linsky, Thomas [2 ]
Fast, Walter [1 ,2 ]
机构
[1] Univ Texas Austin, Coll Pharm, Div Med Chem, Austin, TX 78712 USA
[2] Univ Texas Austin, Grad Program Biochem, Austin, TX 78712 USA
来源
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS | 2010年 / 1804卷 / 10期
基金
美国国家卫生研究院;
关键词
Pentein; Guanidine; Arginine deiminase; Dimethylarginine dimethylaminohydrolase; Agmatine deiminase; Peptidylarginine deiminase; Arginine:glycine amidinotransferase; Arginine:inosamine phosphate; amidinotransferase; N-alpha-succinylarginine dihydrolase; Guanidino-modifying superfamily; L-ARGININEGLYCINE AMIDINOTRANSFERASE; DIMETHYLARGININE DIMETHYLAMINOHYDROLASE; PSEUDOMONAS-AERUGINOSA; DIVERGENT EVOLUTION; CRYSTAL-STRUCTURES; NUCLEOPHILIC CATALYSIS; AGMATINE DEIMINASE; CATABOLIC PATHWAY; ESCHERICHIA-COLI; STRUCTURAL BASIS;
D O I
10.1016/j.bbapap.2010.07.016
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The pentein superfamily is a mechanistically diverse superfamily encompassing both noncatalytic proteins and enzymes that catalyze hydrolase, dihydrolase and amidinotransfer reactions on guanidine substrates. Despite generally low sequence identity, they possess a conserved structural fold and display common mechanistic themes in catalysis. The structurally characterized catalytic penteins possess a conserved core of residues that include a Cys. His and two polar, guanidine-binding residues. All known catalytic penteins use the core Cys to attack the substrate's guanidine moiety to form a covalent thiouronium adduct and all cleave one or more of the guanidine C-N bonds. The mechanistic information compiled to date supports the hypothesis that this superfamily may have evolved divergently from a catalytically promiscuous ancestor. (C) 2010 Published by Elsevier B.V.
引用
收藏
页码:1943 / 1953
页数:11
相关论文
共 52 条
[1]   Structural basis for Ca2+-induced activation of human PAD4 [J].
Arita, K ;
Hashimoto, H ;
Shimizu, T ;
Nakashima, K ;
Yamada, M ;
Sato, M .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (08) :777-783
[2]   Crystal structures of arginine deiminase with covalent reaction intermediates: Implications for catalytic mechanism [J].
Das, K ;
Butler, GH ;
Kwiatkowski, V ;
Clark, AD ;
Yadav, P ;
Arnold, E .
STRUCTURE, 2004, 12 (04) :657-667
[3]   Structure of the mammalian NOS regulator dimethylarginine dimethylaminohydrolase: A basis for the design of specific inhibitors [J].
Frey, Daniel ;
Braun, Oliver ;
Briand, Christophe ;
Vasak, Milan ;
Grutter, Markus G. .
STRUCTURE, 2006, 14 (05) :901-911
[4]   Substrate binding and catalysis by L-arginine:glycine amidinotransferase - A mutagenesis and crystallographic study [J].
Fritsche, E ;
Humm, A ;
Huber, R .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1997, 247 (02) :483-490
[5]   Crystal structure of L-arginine:inosamine-phosphate amidinotransferase StrB1 from Streptomyces griseus:: An enzyme involved in streptomycin biosynthesis [J].
Fritsche, E ;
Bergner, A ;
Humm, A ;
Piepersberg, W ;
Huber, R .
BIOCHEMISTRY, 1998, 37 (51) :17664-17672
[6]   Crystal structures representing the Michaelis complex and the thiouronium reaction intermediate of Pseudomonas aeruginosa arginine deiminase [J].
Galkin, A ;
Lu, XF ;
Dunaway-Mariano, D ;
Herzberg, O .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (40) :34080-34087
[7]   Structural insight into arginine degradation by arginine deiminase, an antibacterial and parasite drug target [J].
Galkin, A ;
Kulakova, L ;
Sarikaya, E ;
Lim, K ;
Howard, A ;
Herzberg, O .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (14) :14001-14008
[8]   Mechanism of eIF6-mediated Inhibition of Ribosomal Subunit Joining [J].
Gartmann, Marco ;
Blau, Michael ;
Armache, Jean-Paul ;
Mielke, Thorsten ;
Topf, Maya ;
Beckmann, Roland .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (20) :14848-14851
[9]   Divergent evolution in the enolase superfamily: the interplay of mechanism and specificity [J].
Gerlt, JA ;
Babbitt, PC ;
Rayment, I .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2005, 433 (01) :59-70
[10]   Divergent evolution of enzymatic function: Mechanistically diverse superfamilies and functionally distinct suprafamilies [J].
Gerlt, JA ;
Babbitt, PC .
ANNUAL REVIEW OF BIOCHEMISTRY, 2001, 70 :209-246