Clinically Relevant Characterization of Lung Adenocarcinoma Subtypes Based on Cellular Pathways: An International Validation Study

被引:44
作者
Bryant, Christopher M. [1 ]
Albertus, Daniel L. [1 ]
Kim, Sinae [3 ]
Chen, Guoan [1 ]
Brambilla, Christian [4 ]
Guedj, Mickael [4 ]
Arima, Chinatsu [7 ]
Travis, William D. [5 ]
Yatabe, Yasushi [6 ]
Takahashi, Takashi [7 ]
Brambilla, Elisabeth [8 ]
Beer, David G. [1 ,2 ]
机构
[1] Univ Michigan, Sch Med, Dept Surg, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Sch Med, Ctr Comprehens Canc, Ann Arbor, MI USA
[3] Univ Michigan, Sch Med, Dept Biostat, Ann Arbor, MI USA
[4] Univ Grenoble 1, Programme Cartes Identite Tumeurs, Grenoble, France
[5] Mem Sloan Kettering Canc Ctr, Dept Pathol, New York, NY 10021 USA
[6] Aichi Canc Ctr Hosp, Nagoya, Aichi 464, Japan
[7] Nagoya Univ, Grad Sch Med, Div Mol Carcinogenesis, Ctr Neurol Dis & Canc, Nagoya, Aichi 4648601, Japan
[8] Univ Grenoble 1, Dept Anat & Cytol Pathol, Grenoble, France
关键词
GENE-EXPRESSION; CANCER; SURVIVAL; CLASSIFICATION; MUTATIONS; NATION; GENOME;
D O I
10.1371/journal.pone.0011712
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Lung adenocarcinoma (AD) represents a predominant type of lung cancer demonstrating significant morphologic and molecular heterogeneity. We sought to understand this heterogeneity by utilizing gene expression analyses of 432 AD samples and examining associations between 27 known cancer-related pathways and the AD subtype, clinical characteristics and patient survival. Unsupervised clustering of AD and gene expression enrichment analysis reveals that cell proliferation is the most important pathway separating tumors into subgroups. Further, AD with increased cell proliferation demonstrate significantly poorer outcome and an increased solid AD subtype component. Additionally, we find that tumors with any solid component have decreased survival as compared to tumors without a solid component. These results lead to the potential to use a relatively simple pathological examination of a tumor in order to determine its aggressiveness and the patient's prognosis. Additional results suggest the ability to use a similar approach to determine a patient's sensitivity to targeted treatment. We then demonstrated the consistency of these findings using two independent AD cohorts from Asia (N = 87) and Europe (N = 89) using the identical analytic procedures.
引用
收藏
页码:1 / 13
页数:13
相关论文
共 14 条
[1]   Gene-expression profiles predict survival of patients with lung adenocarcinoma [J].
Beer, DG ;
Kardia, SLR ;
Huang, CC ;
Giordano, TJ ;
Levin, AM ;
Misek, DE ;
Lin, L ;
Chen, GA ;
Gharib, TG ;
Thomas, DG ;
Lizyness, ML ;
Kuick, R ;
Hayasaka, S ;
Taylor, JMG ;
Iannettoni, MD ;
Orringer, MB ;
Hanash, S .
NATURE MEDICINE, 2002, 8 (08) :816-824
[2]   An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors [J].
Ben-Porath, Ittai ;
Thomson, Matthew W. ;
Carey, Vincent J. ;
Ge, Ruping ;
Bell, George W. ;
Regev, Aviv ;
Weinberg, Robert A. .
NATURE GENETICS, 2008, 40 (05) :499-507
[3]   Somatic mutations affect key pathways in lung adenocarcinoma [J].
Ding, Li ;
Getz, Gad ;
Wheeler, David A. ;
Mardis, Elaine R. ;
McLellan, Michael D. ;
Cibulskis, Kristian ;
Sougnez, Carrie ;
Greulich, Heidi ;
Muzny, Donna M. ;
Morgan, Margaret B. ;
Fulton, Lucinda ;
Fulton, Robert S. ;
Zhang, Qunyuan ;
Wendl, Michael C. ;
Lawrence, Michael S. ;
Larson, David E. ;
Chen, Ken ;
Dooling, David J. ;
Sabo, Aniko ;
Hawes, Alicia C. ;
Shen, Hua ;
Jhangiani, Shalini N. ;
Lewis, Lora R. ;
Hall, Otis ;
Zhu, Yiming ;
Mathew, Tittu ;
Ren, Yanru ;
Yao, Jiqiang ;
Scherer, Steven E. ;
Clerc, Kerstin ;
Metcalf, Ginger A. ;
Ng, Brian ;
Milosavljevic, Aleksandar ;
Gonzalez-Garay, Manuel L. ;
Osborne, John R. ;
Meyer, Rick ;
Shi, Xiaoqi ;
Tang, Yuzhu ;
Koboldt, Daniel C. ;
Lin, Ling ;
Abbott, Rachel ;
Miner, Tracie L. ;
Pohl, Craig ;
Fewell, Ginger ;
Haipek, Carrie ;
Schmidt, Heather ;
Dunford-Shore, Brian H. ;
Kraja, Aldi ;
Crosby, Seth D. ;
Sawyer, Christopher S. .
NATURE, 2008, 455 (7216) :1069-1075
[4]   Relationship of Deregulated Signaling Converging onto mTOR with Prognosis and Classification of Lung Adenocarcinoma Shown by Two Independent In silico Analyses [J].
Ebi, Hiromichi ;
Tomida, Shuta ;
Takeuchi, Toshiyuki ;
Arima, Chinatsu ;
Sato, Takahiko ;
Mitsudomi, Tetsuya ;
Yatabe, Yasushi ;
Osada, Hirotaka ;
Takahashi, Takashi .
CANCER RESEARCH, 2009, 69 (09) :4027-4035
[5]   Cluster analysis and display of genome-wide expression patterns [J].
Eisen, MB ;
Spellman, PT ;
Brown, PO ;
Botstein, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868
[6]   Diversity of gene expression in adenocarcinoma of the lung [J].
Garber, ME ;
Troyanskaya, OG ;
Schluens, K ;
Petersen, S ;
Thaesler, Z ;
Pacyna-Gengelbach, M ;
van de Rijn, M ;
Rosen, GD ;
Perou, CM ;
Whyte, RI ;
Altman, RB ;
Brown, PO ;
Botstein, D ;
Petersen, I .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (24) :13784-13789
[7]   Annual report to the nation on the status of cancer, 1975-2001, with a special feature regarding survival [J].
Jemal, A ;
Clegg, LX ;
Ward, E ;
Ries, LAG ;
Wu, XC ;
Jamison, PM ;
Wingo, PA ;
Howe, HL ;
Anderson, RN ;
Edwards, BK .
CANCER, 2004, 101 (01) :3-27
[8]   Annual Report to the Nation on the Status of Cancer, 1975-2005, Featuring Trends in Lung Cancer, Tobacco Use, and Tobacco Control [J].
Jemal, Ahmedin ;
Thun, Michael J. ;
Ries, Lynn A. G. ;
Howe, Holly L. ;
Weir, Hannah K. ;
Center, Melissa M. ;
Ward, Elizabeth ;
Wu, Xiao-Cheng ;
Eheman, Christie ;
Anderson, Robert ;
Ajani, Umed A. ;
Kohler, Betsy ;
Edwards, Brenda K. .
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 2008, 100 (23) :1672-1694
[9]   Lung adenocarcinoma:: Modification of the 2004 WHO mixed subtype to include the major histologic subtype suggests correlations between papillary and micropapillary adenocarcinoma subtypes, EGFR mutations and gene expression analysis [J].
Motoi, Noriko ;
Szoke, Janos ;
Riely, Gregory J. ;
Seshan, Venkatranian E. ;
Kris, Mark G. ;
Rusch, Valerie W. ;
Gerald, William L. ;
Travis, William D. .
AMERICAN JOURNAL OF SURGICAL PATHOLOGY, 2008, 32A (06) :810-827
[10]   Sonic hedgehog regulates branching morphogenesis in the mammalian lung [J].
Pepicelli, CV ;
Lewis, PM ;
McMahon, AP .
CURRENT BIOLOGY, 1998, 8 (19) :1083-1086