Echinicola salinicaeni sp. nov., a novel bacterium isolated from saltern mud

被引:2
作者
Zhao, Han [1 ]
Song, Chun-Yi [1 ]
Yin, Rui [1 ]
Yi, Yan-Jun [1 ]
Yun, Shuai-Ting [1 ]
Li, Ying-Xiu [1 ]
Zhou, Yan-Xia [1 ]
机构
[1] Shandong Univ, Marine Coll, Weihai 264209, Peoples R China
来源
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY | 2021年 / 114卷 / 11期
基金
中国博士后科学基金; 中国国家自然科学基金;
关键词
Echinicola salinicaeni sp; nov; 16S rRNA gene sequence; Novel species; Polyphasic taxonomy; GENE; TAXONOMY;
D O I
10.1007/s10482-021-01650-3
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel gram-negative, aerobic, pink, motile, gliding, rod-shaped bacterium, designated P51(T), was isolated from saline silt samples in Yantai, China. It was able to grow at 4-42 degrees C (optimum 33 degrees C), pH 4.0-9.0 (optimum 7.0), and in 0-11.0% NaCl (optimum 4.0%, w/v). It grew at 4 degrees C, which was lower than the minimum temperature for related strains. The genome consisted of 4111 genes with a total length of 5 139 782 bp. The 16S rRNA gene sequence analysis indicated that strain P51(T) was a member of the genus Echinicola and most closely related to 'Echinicola shivajiensis'. A genome analysis identified genes encoding proteins associated with carbon source utilisation, and the carotenoid biosynthesis and beta-lactam resistance pathways. Strain P51(T) shared an average nucleotide identity value below 84.7%, an average amino acid identity value between 70.8 and 89.3%, and a digital DNA-DNA hybridisation identity of between 17.9-28.2% with closely related type strains within the genus Echinicola. The sole menaquinone was MK-7, and the major fatty acids were iso-C-15:0, summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c), summed feature 4 (anteiso-C-17:1 B and/or iso-C-17:1 I), and summed feature 9 (iso-C-17:1 omega 9c and/or 10-methyl C-16:0). The polar lipids included one phosphatidylethanolamine, one unidentified aminophospholipid, one unidentified phospholipid, three unidentified aminolipids, and one unknown lipid. The phenotypic, chemotaxonomic, and phylogenetic analyses suggest that strain P51(T) is a novel species of the genus Echinicola, for which the name Echinicola salinicaeni sp. nov. is proposed. The type strain was P51(T) (KCTC 82513(T) = MCCC 1K04413(T)).
引用
收藏
页码:1915 / 1924
页数:10
相关论文
共 32 条
  • [21] Echinicola pacifica gen. nov., sp nov., a novel flexibacterium isolated from the sea urchin Strongylocentrotus intermedius
    Nedashkovskaya, Olga I.
    Kim, Seung Bum
    Vancanneyt, Marc
    Lysenko, Anatoly M.
    Shin, Dong Sung
    Park, Myung Soo
    Lee, Kang Hyun
    Jung, Won Jin
    Kalinovskaya, Natalia I.
    Mikhailov, Valery V.
    Bae, Kyung Sook
    Swings, Jean
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2006, 56 : 953 - 958
  • [22] Paniagua-Michel J, 2012, Methods Mol Biol, V892, P1, DOI 10.1007/978-1-61779-879-5_1
  • [23] Rodriguez-R L.M., 2014, Microbe, V9, P111, DOI [DOI 10.1128/MICROBE.9.111.1, 10.1128/microbe.9.111]
  • [24] Sasser M., 1990, USFCC NEWSL, V20, P1
  • [25] Anditalea andensis gen. nov., sp nov., an alkaliphilic, halotolerant bacterium isolated from extreme alkali-saline soil
    Shi, Wei
    Takano, Tetsuo
    Liu, Shenkui
    [J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2012, 102 (04): : 703 - 710
  • [26] Soltani J., 2016, New and Future Developments in Microbial Biotechnology and Bioengineering: Aspergillus System Properties and Applications, P275, DOI DOI 10.1016/B978-0-444-63505-1.00035-X
  • [27] Echinicola shivajiensis sp nov., a novel bacterium of the family "Cyclobacteriaceae" isolated from brackish water pond
    Srinivas, T. N. R.
    Tryambak, B. Kailash
    Kumar, P. Anil
    [J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2012, 101 (03): : 641 - 647
  • [28] Tindall BJ, 2007, METHODS GEN MOL MICR, V3, P330, DOI DOI 10.1128/9781555817497.CH15
  • [29] Polyphasic taxonomy, a consensus approach to bacterial systematics
    Vandamme, P
    Pot, B
    Gillis, M
    DeVos, P
    Kersters, K
    Swings, J
    [J]. MICROBIOLOGICAL REVIEWS, 1996, 60 (02) : 407 - +
  • [30] Echinicola soli sp. nov., isolated from alkaline saline soil
    Xing, Ya-Ting
    Xu, Lian
    Wang, Hai-Tao
    Huang, Xiao-Xian
    Wang, Shuai
    Sun, Ji-Quan
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (07) : 4139 - 4144