The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera)

被引:22
|
作者
Pasha, Shaik Naseer [1 ]
Shafi, K. Mohamed [1 ,2 ]
Joshi, Adwait G. [1 ]
Meenakshi, Iyer [1 ]
Harini, K. [1 ]
Mahita, Jarjapu [1 ]
Sajeevan, Radha Sivarajan [1 ]
Karpe, Snehal D. [1 ]
Ghosh, Pritha [1 ]
Nitish, Sathyanarayanan [1 ,2 ]
Gandhimathi, A. [1 ]
Mathew, Oommen K. [1 ]
Prasanna, Subramanian Hari [1 ]
Malini, Manoharan [1 ]
Mutt, Eshita [1 ]
Naika, Mahantesha [1 ]
Ravooru, Nithin [1 ]
Rao, Rajas M. [1 ]
Shingate, Prashant N. [1 ]
Sukhwal, Anshul [1 ]
Sunitha, Margaret S. [1 ]
Upadhyay, Atul K. [1 ]
Vinekar, Rithvik S. [1 ]
Sowdhamini, Ramanathan [1 ]
机构
[1] Natl Ctr Biol Sci, TIFR, GKVK Campus, Bangalore 560065, Karnataka, India
[2] Univ Transdisciplinary Hlth Sci & Technol TDU, Bangalore 560064, Karnataka, India
关键词
Plant transcriptome; Functional annotation; Differential expression; Metabolic pathway analysis; BIOSYNTHESIS; PROTEIN; PIPELINE; SYNTHASE; DATABASE; VERSION; GENOME;
D O I
10.1016/j.ygeno.2019.04.014
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Moringa oleifera is a plant well-known for its nutrition value, drought resistance and medicinal properties. cDNA libraries from five different tissues (leaf, root, stem, seed and flower) of M. oleifera cultivar Bhagya were generated and sequenced. We developed a bioinformatics pipeline to assemble transcriptome, along with the previously published M. oleifera genome, to predict 17,148 gene models. Few candidate genes related to biosynthesis of secondary metabolites, vitamins and ion transporters were identified. Expressions were further confirmed by real-time quantitative PCR experiments for few promising leads. Quantitative estimation of metabolites, as well as elemental analysis, was also carried out to support our observations. Enzymes in the biosynthesis of vitamins and metabolites like quercetin and kaempferol are highly expressed in leaves, flowers and seeds. The expression of iron transporters and calcium storage proteins were observed in root and leaves. In general, leaves retain the highest amount of small molecules of interest.
引用
收藏
页码:621 / 628
页数:8
相关论文
共 50 条
  • [31] Global Transcriptomic Analysis Reveals Differentially Expressed Genes Involved in Embryogenic Callus Induction in Drumstick (Moringa oleifera Lam.)
    Yang, Endian
    Zheng, Mingyang
    Zou, Xuan
    Huang, Xiaoling
    Yang, Heyue
    Chen, Xiaoyang
    Zhang, Junjie
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (22)
  • [32] Genome-Wide Identification and Expression Analysis of the Aux/IAA Gene Family of the Drumstick Tree (Moringa oleifera Lam.) Reveals Regulatory Effects on Shoot Regeneration
    Yang, Endian
    Yang, Heyue
    Li, Chunmei
    Zheng, Mingyang
    Song, Huiyun
    Zou, Xuan
    Chen, Xiaoyang
    Zhang, Junjie
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (24)
  • [33] Extraction and identification of natural antioxidant from the seeds of the Moringa oleifera tree variety of Malawi
    Lalas, S
    Tsaknis, J
    JOURNAL OF THE AMERICAN OIL CHEMISTS SOCIETY, 2002, 79 (07) : 677 - 683
  • [34] DRUMSTICK TREE (Moringa oleifera) Lam. LEAF EXTRACT MEDIATED SYNTHESIS OF SILVER NANOPARTICLES AND THEIR ANTIBACTERIAL ACTIVITY AGAINST NOSOCOMIAL BACTERIAL PATHOGENS
    Pal, Nidhi
    Agrawal, Shweta
    JOURNAL OF MICROBIOLOGY BIOTECHNOLOGY AND FOOD SCIENCES, 2023,
  • [35] Publisher Correction: Identification of microRNAs and relative target genes in Moringa oleifera leaf and callus
    Stefano Pirrò
    Ivana Matic
    Arianna Guidi
    Letizia Zanella
    Angelo Gismondi
    Rosella Cicconi
    Roberta Bernardini
    Vittorio Colizzi
    Antonella Canini
    Maurizio Mattei
    Andrea Galgani
    Scientific Reports, 9
  • [36] Discovering genes involved in the synthesis of secondary metabolites from the seeds of Moringa oleifera through transcriptome analysis
    Panes, V. A.
    Discar, M. D. K. A.
    II INTERNATIONAL SYMPOSIUM ON MORINGA, 2021, 1306 : 51 - 58
  • [37] DRUMSTICK TREE (Moringa oleifera) Lam. LEAF EXTRACT MEDIATED SYNTHESIS OF SILVER NANOPARTICLES AND THEIR ANTIBACTERIAL ACTIVITY AGAINST NOSOCOMIAL BACTERIAL PATHOGENS
    Pal, Nidhi
    Agrawal, Shweta
    JOURNAL OF MICROBIOLOGY BIOTECHNOLOGY AND FOOD SCIENCES, 2024, 13 (04):
  • [38] Analysis of transcriptome data and quantitative trait loci enables the identification of candidate genes responsible for fiber strength in Gossypium barbadense
    Duan, Yajie
    Chen, Qin
    Chen, Quanjia
    Zheng, Kai
    Cai, Yongsheng
    Long, Yilei
    Zhao, Jieyin
    Guo, Yaping
    Sun, Fenglei
    Qu, Yanying
    G3-GENES GENOMES GENETICS, 2022, 12 (09):
  • [39] Antioxidant potential and nutritional content of stem, bark and pod of Drumstick tree (Moringa oleifera Lam.) from semi-arid region of Haryana
    Punia, Jyoti
    Singh, Rajvir
    JOURNAL OF THE INDIAN CHEMICAL SOCIETY, 2017, 94 (01) : 103 - 110
  • [40] Identification of candidate chemosensory genes in the antennal transcriptome of Monolepta signata
    He, Wanjie
    Meng, Hanying
    Zhang, Yu
    Zhang, Ge
    Zhi, Mengting
    Li, Guangwei
    Chen, Jing
    PLOS ONE, 2024, 19 (06):