The use of 2H, 13C, 15N multidimensional NMR to study the structure and dynamics of proteins

被引:479
作者
Gardner, KH
Kay, LE
机构
[1] Univ Toronto, Prot Engn Network Ctr Excellence, Toronto, ON M5S 1A8, Canada
[2] Univ Toronto, Dept Med Genet & Microbiol, Toronto, ON M5S 1A8, Canada
[3] Univ Toronto, Dept Biochem, Toronto, ON M5S 1A8, Canada
[4] Univ Toronto, Dept Chem, Toronto, ON M5S 1A8, Canada
来源
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE | 1998年 / 27卷
关键词
protein deuteration; triple resonance NMR; amino acid-specific isotopic labeling; structure determination; sidechain dynamics;
D O I
10.1146/annurev.biophys.27.1.357
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
During the past thirty years, deuterium labeling has been used to improve the resolution and sensitivity of protein NMR spectra used in a wide variety of applications. Most recently, the combination of triple resonance experiments and H-2, C-13, N-15 labeled samples has been critical to the solution structure determination of several proteins with molecular weights on the order of 30 kDa. Here we review the developments in isotopic labeling strategies, NMR pulse sequences, and structure-determination protocols that have facilitated this advance and hold promise for future NMR-based structural studies of even larger systems. As well, we detail recent progress in the use of solution H-2 NMR methods to probe the dynamics of protein sidechains.
引用
收藏
页码:357 / 406
页数:50
相关论文
共 176 条
[1]   THE DIFFERENCES IN THE T-2 RELAXATION RATES OF THE PROTONS IN THE PARTIALLY-DEUTERIATED AND FULLY PROTONATED SUGAR RESIDUES IN A LARGE OLIGO-DNA (NMR-WINDOW) GIVES COMPLEMENTARY STRUCTURAL INFORMATION [J].
AGBACK, P ;
MALTSEVA, TV ;
YAMAKAGE, SI ;
NILSON, FPR ;
FOLDESI, A ;
CHATTOPADHYAYA, J .
NUCLEIC ACIDS RESEARCH, 1994, 22 (08) :1404-1412
[2]   CARBON-13 FOURIER TRANFORM NUCLEAR MAGNETIC RESONANCE .3. CONFORMATION AND SEGMENTAL MOTION OF NATIVE AND DENATURED RIBONUCLEASE-A IN SOLUTION - APPLICATION OF NATURAL-ABUNDANCE CARBON-13 PARTIALLY RELAXED FOURIER TRANSFORM NUCLEAR MAGNETIC RESONANCE [J].
ALLERHAN.A ;
DODDRELL, D ;
GLUSHKO, U ;
COCHRAN, DW ;
WENKERT, E ;
LAWSON, PJ ;
GURD, FRN .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1971, 93 (02) :544-+
[4]  
[Anonymous], 1986, NMR or Proteins and Nucleic Acids.: Polypeptide Secondary Structures in Proteins by NMR
[5]   SEQUENCE-SPECIFIC H-1-NMR ASSIGNMENTS AND SECONDARY STRUCTURE IN SOLUTION OF ESCHERICHIA-COLI TRP REPRESSOR [J].
ARROWSMITH, CH ;
PACHTER, R ;
ALTMAN, RB ;
IYER, SB ;
JARDETZKY, O .
BIOCHEMISTRY, 1990, 29 (27) :6332-6341
[6]   THE USE OF SELECTIVE DEUTERATION FOR THE SEQUENCE SPECIFIC H-1-NMR ASSIGNMENT OF LARGER PROTEINS [J].
ARROWSMITH, CH ;
TREATCLEMONS, L ;
SZILAGYI, L ;
PACHTER, R ;
JARDETZKY, O .
MAKROMOLEKULARE CHEMIE-MACROMOLECULAR SYMPOSIA, 1990, 34 :33-46
[7]   GLOBAL FOLD DETERMINATION FROM A SMALL NUMBER OF DISTANCE RESTRAINTS [J].
ASZODI, A ;
GRADWELL, MJ ;
TAYLOR, WR .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 251 (02) :308-326
[8]  
Bastiaan E. W., 1987, ANNU REP NMR SPECTRO, V19, P35
[9]   Improved large scale culture of Methylophilus methylotrophus for C-13/N-15 labeling and random fractional deuteration of ribonucleotides [J].
Batey, RT ;
Cloutier, N ;
Mao, HY ;
Williamson, JR .
NUCLEIC ACIDS RESEARCH, 1996, 24 (23) :4836-4837
[10]   SEPARATION OF THE DIFFERENT ORDERS OF NMR MULTIPLE-QUANTUM TRANSITIONS BY THE USE OF PULSED FIELD GRADIENTS [J].
BAX, A ;
DEJONG, PG ;
MEHLKOPF, AF ;
SMIDT, J .
CHEMICAL PHYSICS LETTERS, 1980, 69 (03) :567-570