Heritability estimates from human twin data by incorporating historical prior information

被引:10
作者
Chen, MH
Manatunga, AK
Williams, CJ
机构
[1] Worcester Polytech Inst, Dept Math Sci, Worcester, MA 01609 USA
[2] Emory Univ, Rollins Sch Publ Hlth, Dept Biostat, Atlanta, GA 30322 USA
[3] Univ Idaho, Div Stat, Moscow, ID 83844 USA
关键词
Bayesian methods; Gibbs sampling; human genetics; likelihood; Markov chain Monte Carlo; simulation;
D O I
10.2307/2533662
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Bayesian methods are commonly used in some analyses of human genetic data, such as segregation and linkage analyses, but they are not typically used for analyses of human twin data. In this paper we develop a scheme for a Bayesian analysis of human twin data. We develop prior elicitation schemes to incorporate historical information. We consider three prior schemes: fully informative, semi-informative and noninformative. We use Markov chain Monte Carlo sampling algorithms to facilitate Bayesian computation and provide detailed implementation schemes. We also develop model diagnostics for assessing the goodness of fit of twin models. Using a simulation study, we show that if the purpose of the study is to estimate the intraclass correlations or heritability in twin studies, then the semi-informative prior is as informative as the fully informative prior. Finally, a real data example is used to illustrate the proposed methodologies.
引用
收藏
页码:1348 / 1362
页数:15
相关论文
共 39 条
  • [1] RISK-FACTORS FOR CORONARY HEART-DISEASE IN ADULT FEMALE TWINS - GENETIC HERITABILITY AND SHARED ENVIRONMENTAL-INFLUENCES
    AUSTIN, MA
    KING, MC
    BAWOL, RD
    HULLEY, SB
    FRIEDMAN, GD
    [J]. AMERICAN JOURNAL OF EPIDEMIOLOGY, 1987, 125 (02) : 308 - 318
  • [2] Berger JO., 1985, Statistical Decision Theory and Bayesian Analysis, V2, DOI DOI 10.1007/978-1-4757-4286-2
  • [3] SAMPLING AND BAYES INFERENCE IN SCIENTIFIC MODELING AND ROBUSTNESS
    BOX, GEP
    [J]. JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY, 1980, 143 : 383 - 430
  • [4] EXPLAINING THE GIBBS SAMPLER
    CASELLA, G
    GEORGE, EI
    [J]. AMERICAN STATISTICIAN, 1992, 46 (03) : 167 - 174
  • [5] Performance study of marginal posterior density estimation via Kullback-Leibler divergence
    Chen, MH
    Shao, QM
    [J]. TEST, 1997, 6 (02) : 321 - 350
  • [7] CHEN MH, 1999, IN PRESS J ROYAL S B, V61
  • [8] CHEN MH, 1998, IN PRESS J COMPUTATI, V7
  • [9] HIGH-DENSITY-LIPOPROTEIN CHOLESTEROL - A 16-YEAR LONGITUDINAL-STUDY IN AGING MALE TWINS
    CHRISTIAN, JC
    CARMELLI, D
    CASTELLI, WP
    FABSITZ, R
    GRIM, CE
    MEANEY, FJ
    NORTON, JA
    REED, T
    WILLIAMS, CJ
    WOOD, PD
    [J]. ARTERIOSCLEROSIS, 1990, 10 (06): : 1020 - 1025
  • [10] GENETICS OF PLASMA CHOLESTEROL AND TRIGLYCERIDES - STUDY OF ADULT MALE TWINS
    CHRISTIAN, JC
    FEINLEIB, M
    HULLEY, SB
    CASTELLI, WP
    FABSITZ, RR
    GARRISON, RJ
    BORHANI, NO
    ROSENMAN, RH
    WAGNER, J
    [J]. ACTA GENETICAE MEDICAE ET GEMELLOLOGIAE, 1976, 25 : 145 - 149