Master Regulator Analysis of the SARS-CoV-2/Human Interactome

被引:135
|
作者
Guzzi, Pietro H. [1 ]
Mercatelli, Daniele [2 ]
Ceraolo, Carmine [2 ]
Giorgi, Federico M. [2 ]
机构
[1] Univ Catanzaro, Dept Surg & Med Sci, Catanzaro 88100, Italy
[2] Univ Bologna, Dept Pharm & Biotechnol, Bologna 40126, Italy
关键词
coronavirus; bioinformatics; gene network analysis; COVID-19; SARS-CoV-2; CONVERTING ENZYME 2; CASPASE-DEPENDENT APOPTOSIS; MULTIPLE SEQUENCE ALIGNMENT; E3 UBIQUITIN LIGASE; GENE-TRANSCRIPTION; VIRUS-REPLICATION; CORONAVIRUS; COMPLEX; PROTEIN; SARS;
D O I
10.3390/jcm9040982
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
The recent epidemic outbreak of a novel human coronavirus called SARS-CoV-2 causing the respiratory tract disease COVID-19 has reached worldwide resonance and a global effort is being undertaken to characterize the molecular features and evolutionary origins of this virus. In this paper, we set out to shed light on the SARS-CoV-2/host receptor recognition, a crucial factor for successful virus infection. Based on the current knowledge of the interactome between SARS-CoV-2 and host cell proteins, we performed Master Regulator Analysis to detect which parts of the human interactome are most affected by the infection. We detected, amongst others, affected apoptotic and mitochondrial mechanisms, and a downregulation of the ACE2 protein receptor, notions that can be used to develop specific therapies against this new virus.
引用
收藏
页码:1 / 16
页数:15
相关论文
共 50 条
  • [1] Structural analysis of SARS-CoV-2 genome and predictions of the human interactome
    Vandelli, Andrea
    Monti, Michele
    Milanetti, Edoardo
    Armaos, Alexandros
    Rupert, Jakob
    Zacco, Elsa
    Bechara, Elias
    Ponti, Riccardo Delli
    Tartaglia, Gian Gaetano
    NUCLEIC ACIDS RESEARCH, 2020, 48 (20) : 11270 - 11283
  • [2] The SARS-CoV-2 RNA interactome
    Lee, Sungyul
    Lee, Young-suk
    Choi, Yeon
    Son, Ahyeon
    Park, Youngran
    Lee, Kyung-Min
    Kim, Jeesoo
    Kim, Jong-Seo
    Kim, V. Narry
    MOLECULAR CELL, 2021, 81 (13) : 2838 - +
  • [3] Interactome Analysis of the Nucleocapsid Protein of SARS-CoV-2 Virus
    Zheng, Xiaoqin
    Sun, Zeyu
    Yu, Liang
    Shi, Danrong
    Zhu, Miaojin
    Yao, Hangping
    Li, Lanjuan
    PATHOGENS, 2021, 10 (09):
  • [4] The SARS-CoV-2 RNA–protein interactome in infected human cells
    Nora Schmidt
    Caleb A. Lareau
    Hasmik Keshishian
    Sabina Ganskih
    Cornelius Schneider
    Thomas Hennig
    Randy Melanson
    Simone Werner
    Yuanjie Wei
    Matthias Zimmer
    Jens Ade
    Luisa Kirschner
    Sebastian Zielinski
    Lars Dölken
    Eric S. Lander
    Neva Caliskan
    Utz Fischer
    Jörg Vogel
    Steven A. Carr
    Jochen Bodem
    Mathias Munschauer
    Nature Microbiology, 2021, 6 : 339 - 353
  • [5] Viral Targets in the Human Interactome with Comprehensive Centrality Analysis: SARS-CoV-2, a Case Study
    Kumar, Nilesh
    Mukhtar, M. Shahid
    DATA, 2024, 9 (08)
  • [6] The SARS-CoV-2 RNA-protein interactome in infected human cells
    Schmidt, Nora
    Lareau, Caleb A.
    Keshishian, Hasmik
    Ganskih, Sabina
    Schneider, Cornelius
    Hennig, Thomas
    Melanson, Randy
    Werner, Simone
    Wei, Yuanjie
    Zimmer, Matthias
    Ade, Jens
    Kirschner, Luisa
    Zielinski, Sebastian
    Doelken, Lars
    Lander, Eric S.
    Caliskan, Neva
    Fischer, Utz
    Vogel, Joerg
    Carr, Steven A.
    Bodem, Jochen
    Munschauer, Mathias
    NATURE MICROBIOLOGY, 2021, 6 (03) : 339 - +
  • [7] Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
    Hussain, Mushtaq
    Jabeen, Nusrat
    Shabbir, Sanya
    Udin, Nasir
    Aziz, Basma
    Amanullah, Anusha
    Raza, Fozia
    Baig, Ayesha Ashraf
    DATA IN BRIEF, 2020, 32
  • [8] Analysis of the Tropism of SARS-CoV-2 Based on the Host Interactome of the Spike Protein
    Bamberger, Casimir
    Pankow, Sandra
    Martinez-Bartolome, Salvador
    Diedrich, Jolene K.
    Park, Robin S. K.
    Yates III, John R.
    JOURNAL OF PROTEOME RESEARCH, 2023, 22 (12) : 3742 - 3753
  • [9] Comparative Proteomics and Interactome Analysis of the SARS-CoV-2 Nucleocapsid Protein in Human and Bat Cell Lines
    Armstrong, Stuart D.
    Alonso, Covadonga
    Garcia-Dorival, Isabel
    VIRUSES-BASEL, 2024, 16 (07):
  • [10] SARS-CoV-2: A Master of Immune Evasion
    Rubio-Casillas, Alberto
    Redwan, Elrashdy M.
    Uversky, Vladimir N.
    BIOMEDICINES, 2022, 10 (06)